Factsheet for GSMUA_AchrUn_randomP10850_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P04230_001	Banana	nucleus	66.13	68.09
GSMUA_Achr10P...	Banana	nucleus	64.22	64.84
GSMUA_Achr11P...	Banana	nucleus	44.09	46.0
GSMUA_Achr9P26900_001	Banana	plastid	16.29	42.86
GSMUA_Achr9P26910_001	Banana	nucleus	17.57	37.93
GSMUA_Achr8P29850_001	Banana	nucleus	19.17	34.09
GSMUA_Achr9P16800_001	Banana	nucleus	18.85	33.91
GSMUA_Achr3P16300_001	Banana	endoplasmic reticulum, golgi, mitochondrion, plastid	21.41	29.39
GSMUA_Achr5P09310_001	Banana	endoplasmic reticulum	22.04	29.36
GSMUA_Achr7P03120_001	Banana	nucleus	18.53	23.58
GSMUA_AchrUn_...	Banana	nucleus	22.36	22.73
GSMUA_Achr7P13680_001	Banana	nucleus	26.52	22.62
GSMUA_Achr9P08370_001	Banana	nucleus	15.97	19.68
GSMUA_Achr6P29100_001	Banana	nucleus	18.21	19.26

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_AchrUn_randomG10850_001	EnsemblPlants:GSMUA_AchrUn_randomP10850_001
EnsemblPlants:GSMUA_AchrUn_randomT10850_001	InterPro:IPR000270	UniProt:M0U844	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745
PANTHER:PTHR31734	PANTHER:PTHR31734:SF6	SUPFAM:SSF54277	UniParc:UPI0002960C84	SEG:seg	:

Description

Auxin-responsive protein IAA10 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG10850_001]

Coordinates

chrchrUn_random:+:52605995..52608237

Molecular Weight (calculated)

32724.4 Da

IEP (calculated)

4.993

GRAVY (calculated)

-0.240

Length

313 amino acids

Sequence
(BLAST)

001: MVRGYDGGLA SPGSVSKAEA AAAEEEEGLV ADDVGGGAPG KAGEREEEVL SGDGEEEGEE ELDLGLTLGA AKRGKSEPSA ARWGPCCRIL TAKDFPSLSS
101: LGSPRSPSAS SVSSSSGTNL GGGIGTGVAG TKRAAESVSH DVGGSSHPPS SQVVVGWPPI RQFRMNNLFN HSKDSTLETD SAVAIKRSNI AVRSSFFVKV
201: KMDGDPIGRK VDLSAHDSYE ALAVALELMF RLPTISSAIE ASVHGAKISK LLDGSLEFAL TYEDKDGDWM LVGDVPWGMF LEAVKRLRIM RTLDANGLGR
301: SIHFGKVSSN FQA

Best Arabidopsis Sequence Match ( AT2G33310.2 )
(BLAST)

001: MITELEMGKG ESELELGLGL SLGGGTAAKI GKSGGGGAWG ERGRLLTAKD FPSVGSKRAA DSASHAGSSP PRSSSQVVGW PPIGSHRMNS LVNNQATKSA
101: REEEEAGKKK VKDDEPKDVT KKVNGKVQVG FIKVNMDGVA IGRKVDLNAH SSYENLAQTL EDMFFRTNPG TVGLTSQFTK PLRLLDGSSE FVLTYEDKEG
201: DWMLVGDVPW RMFINSVKRL RVMKTSEANG LAARNQEPNE RQRKQPV

Arabidopsis Description

IAA13Auxin-responsive protein IAA13 [Source:UniProtKB/Swiss-Prot;Acc:Q38831]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.