Factsheet for GSMUA_Achr7P03120_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0109400-01	Rice	nucleus	47.97	47.97
TraesCS7B01G222900.1	Wheat	nucleus	47.97	46.83
Zm00001d049715_P001	Maize	nucleus	43.5	45.92
EES13224	Sorghum	nucleus	44.72	45.64
TraesCS7A01G322000.1	Wheat	nucleus	48.37	44.07
GSMUA_Achr9P26900_001	Banana	plastid	19.51	40.34
HORVU7Hr1G077110.10	Barley	nucleus	48.78	37.27
GSMUA_Achr9P26910_001	Banana	nucleus	21.54	36.55
TraesCS7D01G318900.2	Wheat	plastid	47.97	36.31
GSMUA_Achr6P29100_001	Banana	nucleus	43.5	36.15
GSMUA_Achr9P08370_001	Banana	nucleus	36.99	35.83
GSMUA_Achr8P29850_001	Banana	nucleus	22.36	31.25
GSMUA_Achr9P16800_001	Banana	nucleus	19.92	28.16
GSMUA_Achr3P16300_001	Banana	endoplasmic reticulum, golgi, mitochondrion, plastid	24.39	26.32
GSMUA_Achr5P09310_001	Banana	endoplasmic reticulum	24.39	25.53
GSMUA_Achr2P04230_001	Banana	nucleus	25.2	20.39
GSMUA_Achr7P13680_001	Banana	nucleus	29.27	19.62
GSMUA_Achr10P...	Banana	nucleus	24.39	19.35
GSMUA_Achr11P...	Banana	nucleus	23.58	19.33
GSMUA_AchrUn_...	Banana	nucleus	23.98	19.16
GSMUA_AchrUn_...	Banana	nucleus	23.58	18.53

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr7G03120_001	EnsemblPlants:GSMUA_Achr7P03120_001
EnsemblPlants:GSMUA_Achr7T03120_001	InterPro:IPR000270	UniProt:M0TEA2	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745
PANTHER:PTHR31734	PANTHER:PTHR31734:SF19	SUPFAM:SSF54277	UniParc:UPI0002957296	:	:

Description

Putative Auxin-responsive protein IAA25 [Source:GMGC_GENE;Acc:GSMUA_Achr7G03120_001]

Coordinates

chr7:+:2465164..2468395

Molecular Weight (calculated)

27526.8 Da

IEP (calculated)

7.993

GRAVY (calculated)

-0.640

Length

246 amino acids

Sequence
(BLAST)

001: MKATVLEPPP KDGRREVHED RANKTASGYL NNLELRLGMS LVNGQEVGDG KRGSCAGGFV DPWSLAARQE TAALEQAHQK LGPFAISRST HPPQVVGWPP
101: VCSFRKNLGN QNQSNSTMSS EANPEKIKVA KDEKVNNELQ ERPTMFVKVN MEGCTVGRKI DLKLHNGYDS LSRALQKMFH NLFPANYLNN PKQDEKEEVL
201: SPSYILLYED GEGDRMLVGD VPWELFIHSV KRLYITLDPR AHKCGL

Best Arabidopsis Sequence Match ( AT1G51950.1 )
(BLAST)

001: MEGYSRNGEI SPKLLDLMIP QERRNWFHDE KNSVFKTEEK KLELKLGPPG EEDDDESMIR HMKKEPKDKS ILSLAGKYFS PSSTKTTSHK RTAPGPVVGW
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR

Arabidopsis Description

IAA18Auxin-responsive protein IAA18 [Source:UniProtKB/Swiss-Prot;Acc:O24408]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.