Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d049715_P001 | Maize | nucleus | 81.74 | 84.55 |
| Os08t0109400-01 | Rice | nucleus | 57.68 | 56.5 |
| TraesCS7B01G222900.1 | Wheat | nucleus | 57.26 | 54.76 |
| TraesCS7A01G322000.1 | Wheat | nucleus | 58.09 | 51.85 |
| GSMUA_Achr7P03120_001 | Banana | nucleus | 45.64 | 44.72 |
| HORVU7Hr1G077110.10 | Barley | nucleus | 57.68 | 43.17 |
| TraesCS7D01G318900.2 | Wheat | plastid | 57.68 | 42.77 |
| EES00605 | Sorghum | nucleus, plastid | 23.24 | 29.02 |
| KXG31308 | Sorghum | cytosol | 22.41 | 27.41 |
| EES17832 | Sorghum | nucleus | 26.97 | 26.86 |
| KXG19391 | Sorghum | nucleus | 22.41 | 26.47 |
| KXG31359 | Sorghum | cytosol, nucleus, peroxisome | 26.97 | 21.96 |
| OQU84670 | Sorghum | nucleus | 25.73 | 21.23 |
| KXG28215 | Sorghum | nucleus | 29.46 | 19.83 |
| KXG33336 | Sorghum | nucleus | 26.97 | 17.81 |
| KXG22376 | Sorghum | nucleus | 25.31 | 17.68 |
| OQU86163 | Sorghum | golgi, plastid | 25.73 | 17.32 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | EntrezGene:8068536 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | UniProt:C5YLV4 |
| EnsemblPlants:EES13224 | ProteinID:EES13224 | ProteinID:EES13224.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 |
| PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF19 | EnsemblPlantsGene:SORBI_3007G009300 | SUPFAM:SSF54277 | UniParc:UPI0001A87702 |
| RefSeq:XP_002443729.1 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr7:+:850149..855415
Molecular Weight (calculated)
26494.3 Da
IEP (calculated)
6.794
GRAVY (calculated)
-0.745
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSSSSAAQR LKLKQEQADD CSEMQGSHRG LMSSLELRLG ISSDNGGGSG DPWLGVGVHP WSLAGRQAEK VALEQDHQRP PPPQPVGWPP VGAFRRSHLQ
101: VGAKAVEEPT SKVKLGEQGP APARSTMFVK VNMEGCAVGR KVDLQAHCGY ASLSRALQAM FHGFLSDGQW RIAGREEDDD DDDEQPEPTK KGENKSNKKA
201: YILLYEDNEG DRMLVGDVPW ELFMASVKRL YIAQDPRKTK N
101: VGAKAVEEPT SKVKLGEQGP APARSTMFVK VNMEGCAVGR KVDLQAHCGY ASLSRALQAM FHGFLSDGQW RIAGREEDDD DDDEQPEPTK KGENKSNKKA
201: YILLYEDNEG DRMLVGDVPW ELFMASVKRL YIAQDPRKTK N
001: MEGYSRNGEI SPKLLDLMIP QERRNWFHDE KNSVFKTEEK KLELKLGPPG EEDDDESMIR HMKKEPKDKS ILSLAGKYFS PSSTKTTSHK RTAPGPVVGW
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR
Arabidopsis Description
IAA18Auxin-responsive protein IAA18 [Source:UniProtKB/Swiss-Prot;Acc:O24408]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.