Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d038784_P001 | Maize | nucleus | 72.17 | 70.54 |
| Os05t0523300-01 | Rice | nucleus | 61.45 | 64.83 |
| TraesCS1B01G356600.1 | Wheat | cytosol | 52.17 | 60.61 |
| TraesCS1A01G343300.1 | Wheat | nucleus | 51.3 | 60.2 |
| TraesCS1D01G345400.1 | Wheat | nucleus | 50.72 | 59.32 |
| KXG33336 | Sorghum | nucleus | 51.88 | 49.04 |
| CDX87072 | Canola | cytosol | 22.61 | 44.57 |
| AT5G25890.1 | Thale cress | nucleus | 22.32 | 44.0 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 22.03 | 43.68 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 22.03 | 43.68 |
| Bra036557.1-P | Field mustard | nucleus | 22.03 | 43.43 |
| Bra009867.1-P | Field mustard | cytosol | 22.03 | 43.18 |
| CDY19790 | Canola | cytosol | 22.32 | 39.49 |
| KRH09948 | Soybean | nucleus | 36.52 | 39.38 |
| PGSC0003DMT400006709 | Potato | nucleus | 32.17 | 39.22 |
| Solyc03g121060.2.1 | Tomato | nucleus | 32.17 | 38.68 |
| AT3G16500.1 | Thale cress | nucleus | 30.14 | 38.66 |
| CDY64626 | Canola | cytosol | 30.14 | 38.66 |
| CDY34957 | Canola | nucleus | 29.86 | 38.29 |
| Bra021184.1-P | Field mustard | nucleus | 29.86 | 38.29 |
| CDX87863 | Canola | nucleus | 28.12 | 38.19 |
| CDY33844 | Canola | nucleus | 27.83 | 37.94 |
| CDY43104 | Canola | nucleus | 29.28 | 37.83 |
| AT1G51950.1 | Thale cress | nucleus | 28.99 | 37.45 |
| Bra018938.1-P | Field mustard | nucleus | 27.25 | 37.15 |
| VIT_04s0008g00220.t01 | Wine grape | nucleus | 37.1 | 37.1 |
| CDY22876 | Canola | nucleus | 26.96 | 36.76 |
| OQU84670 | Sorghum | nucleus | 31.01 | 36.64 |
| EES17832 | Sorghum | nucleus | 25.51 | 36.36 |
| Bra014303.1-P | Field mustard | nucleus | 28.41 | 36.3 |
| CDX75884 | Canola | cytosol | 28.41 | 36.16 |
| KRH23388 | Soybean | nucleus | 36.23 | 36.13 |
| Bra001634.1-P | Field mustard | nucleus | 28.41 | 36.03 |
| CDX82399 | Canola | nucleus | 28.41 | 36.03 |
| CDY46538 | Canola | nucleus | 28.12 | 35.93 |
| KRH44271 | Soybean | nucleus | 32.17 | 35.46 |
| KRH47203 | Soybean | nucleus | 32.46 | 35.33 |
| CDY53439 | Canola | nucleus | 27.83 | 35.16 |
| CDX92077 | Canola | nucleus | 28.99 | 35.09 |
| Bra022164.1-P | Field mustard | nucleus | 28.99 | 35.09 |
| GSMUA_Achr7P13680_001 | Banana | nucleus | 35.36 | 33.24 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.99 | 32.47 |
| OQU86163 | Sorghum | golgi, plastid | 29.28 | 28.21 |
| VIT_09s0002g03410.t01 | Wine grape | nucleus | 35.36 | 27.79 |
| EES13224 | Sorghum | nucleus | 17.68 | 25.31 |
| KXG19391 | Sorghum | nucleus | 14.49 | 24.51 |
| KXG31359 | Sorghum | cytosol, nucleus, peroxisome | 19.13 | 22.3 |
| EES00605 | Sorghum | nucleus, plastid | 12.46 | 22.28 |
| KXG31308 | Sorghum | cytosol | 12.46 | 21.83 |
| KXG28215 | Sorghum | nucleus | 17.97 | 17.32 |
Protein Annotations
| MapMan:11.2.2.1.2 | Gene3D:3.10.20.90 | UniProt:A0A1B6P9N0 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 |
| EnsemblPlants:KXG22376 | ProteinID:KXG22376 | ProteinID:KXG22376.1 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF90 | EnsemblPlantsGene:SORBI_3009G203700 | SUPFAM:SSF54277 | UniParc:UPI0003C672F3 | SEG:seg |
Description
hypothetical protein
Coordinates
chr9:-:55241690..55246032
Molecular Weight (calculated)
37206.6 Da
IEP (calculated)
5.347
GRAVY (calculated)
-0.639
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MEESSGERAP STPQLLNLIR DEREWKVIRE AEDGGGSSTT RSPDVEDDSK LELKLGLPGA QDDERMARQG EKMEQQQESC TVLSLGSGCF PSHSKLATST
101: GATTTGAKRG FLATVGAKAE GCKQRQEDRE GCGNELLTLG GENMAGERKK GCCPPSSSHD SAAGPAVHSS NPHLTRGSVL PVVGWPPVRS FRRNLTNVSS
201: SKQSPDQQND EACDKAKQTC KRSPLIKINM DGIPIGRKIN LSAYNNYQKL SSAVEDLFCG FLEAAQKDLA CSEIGEQGAE EKIFSGLLDG TGEYTLIFED
301: SEGGRTLVGD LPWNVFVSTA KRLRVMKSSE LPHVLIKTAS ERADN
101: GATTTGAKRG FLATVGAKAE GCKQRQEDRE GCGNELLTLG GENMAGERKK GCCPPSSSHD SAAGPAVHSS NPHLTRGSVL PVVGWPPVRS FRRNLTNVSS
201: SKQSPDQQND EACDKAKQTC KRSPLIKINM DGIPIGRKIN LSAYNNYQKL SSAVEDLFCG FLEAAQKDLA CSEIGEQGAE EKIFSGLLDG TGEYTLIFED
301: SEGGRTLVGD LPWNVFVSTA KRLRVMKSSE LPHVLIKTAS ERADN
001: MEEEKRLELR LAPPCHQFTS NNNINGSKQK SSTKETSFLS NNRVEVAPVV GWPPVRSSRR NLTAQLKEEM KKKESDEEKE LYVKINMEGV PIGRKVNLSA
101: YNNYQQLSHA VDQLFSKKDS WDLNRQYTLV YEDTEGDKVL VGDVPWEMFV STVKRLHVLK TSHAFSLSPR KHGKE
101: YNNYQQLSHA VDQLFSKKDS WDLNRQYTLV YEDTEGDKVL VGDVPWEMFV STVKRLHVLK TSHAFSLSPR KHGKE
Arabidopsis Description
IAA28Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.