CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004697_P001	Maize	nucleus	74.3	76.22
Zm00001d049141_P002	Maize	nucleus	71.23	71.83
TraesCS4B01G108600.2	Wheat	nucleus	54.19	53.89
TraesCS4A01G204900.1	Wheat	nucleus	54.19	53.74
HORVU4Hr1G016160.1	Barley	plastid	52.23	52.09
Os11t0221000-01	Rice	nucleus	41.06	51.04
TraesCS4D01G105700.1	Wheat	cytosol	52.51	50.0
EES13224	Sorghum	nucleus	19.83	29.46
GSMUA_Achr9P08370_001	Banana	nucleus	19.27	27.17
EES17832	Sorghum	nucleus	18.16	26.86
KXG19391	Sorghum	nucleus	15.08	26.47
EES00605	Sorghum	nucleus, plastid	14.25	26.42
GSMUA_Achr6P29100_001	Banana	nucleus	21.51	26.01
KXG31308	Sorghum	cytosol	14.25	25.89
OQU84670	Sorghum	nucleus	17.88	21.92
KXG31359	Sorghum	cytosol, nucleus, peroxisome	17.6	21.28
KXG33336	Sorghum	nucleus	18.44	18.08
KXG22376	Sorghum	nucleus	17.32	17.97
OQU86163	Sorghum	golgi, plastid	16.76	16.76

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	UniProt:A0A1B6PRC8	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
EnsemblPlants:KXG28215	ProteinID:KXG28215	ProteinID:KXG28215.1	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745
PANTHER:PTHR31734	PANTHER:PTHR31734:SF35	EnsemblPlantsGene:SORBI_3005G098400	SUPFAM:SSF54277	UniParc:UPI00081ADFAC	SEG:seg

Description

hypothetical protein

Coordinates

chr5:-:16077543..16084540

Molecular Weight (calculated)

37602.7 Da

IEP (calculated)

6.996

GRAVY (calculated)

-0.469

Length

358 amino acids

Sequence
(BLAST)

001: MLNLVSFETP PLGRQERSAN TTTVTAAAAI RGKKEESSSN TCFHGHLDLS LGISLSHGSG GGCDASSCGG NKQASYGGRQ GSRDDKDDVR CITTAAATAA
101: NVITARHDHV GDLTASSGGG GWAAAFMPSP TSFMHPWSLA ARQQKAAAEQ DRTPPTTYMS SNDDRVATSP SAVGWPPVHT SRRNIVTAMQ VPKPTGATAA
201: DGPESTTTTH ATAGGGEKNV APAPPTDSTV VATLIRPPPA NMFAKVHMEG YAIGRKINLR AQGGYDSLSR VLTNMTTNFF CPADCSGAGT GEKDVPNSDK
301: FIFLYEDFEG DRMLVGDVPW ELFLASAKRL YIVRNPVSSD KGQGEGDGKY KTEKATND

Best Arabidopsis Sequence Match ( AT1G04550.2 )
(BLAST)

001: MRGVSELEVG KSNLPAESEL ELGLGLSLGG GAWKERGRIL TAKDFPSVGS KRSAESSSHQ GASPPRSSQV VGWPPIGLHR MNSLVNNQAM KAARAEEGDG
101: EKKVVKNDEL KDVSMKVNPK VQGLGFVKVN MDGVGIGRKV DMRAHSSYEN LAQTLEEMFF GMTGTTCREK VKPLRLLDGS SDFVLTYEDK EGDWMLVGDV
201: PWRMFINSVK RLRIMGTSEA SGLAPRRQEQ KDRQRNNPV

Arabidopsis Description

IAA12Auxin-responsive protein IAA12 [Source:UniProtKB/Swiss-Prot;Acc:Q38830]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.