Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G32280.1 | KXG19536 | AT1G19220.1 | 21734647 |
| AT4G32280.1 | KXG19536 | AT5G20730.1 | 21734647 |
| AT4G32280.1 | EES11567 | AT5G57420.1 | 21734647 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d018414_P001 | Maize | nucleus | 85.28 | 81.55 |
| Os02t0805100-01 | Rice | nucleus | 60.91 | 65.93 |
| HORVU6Hr1G088140.2 | Barley | cytosol, mitochondrion, nucleus | 54.82 | 62.07 |
| TraesCS6D01G357500.1 | Wheat | cytosol, mitochondrion, nucleus | 52.79 | 60.47 |
| TraesCS6A01G373300.1 | Wheat | cytosol, nucleus, plastid | 53.3 | 60.0 |
| TraesCS6B01G411000.1 | Wheat | cytosol, mitochondrion, nucleus | 52.79 | 58.76 |
| KXG19391 | Sorghum | nucleus | 50.25 | 48.53 |
| GSMUA_Achr9P26900_001 | Banana | plastid | 28.93 | 47.9 |
| GSMUA_Achr9P26910_001 | Banana | nucleus | 32.49 | 44.14 |
| PGSC0003DMT400052767 | Potato | cytosol, extracellular, nucleus | 18.27 | 39.56 |
| PGSC0003DMT400079375 | Potato | cytosol | 29.44 | 28.71 |
| PGSC0003DMT400035770 | Potato | cytosol | 31.47 | 28.31 |
| KRH20139 | Soybean | nucleus | 29.44 | 28.16 |
| KRH03666 | Soybean | cytosol | 28.43 | 28.14 |
| Solyc07g008020.2.1 | Tomato | cytosol | 27.92 | 28.06 |
| VIT_04s0008g05560.t01 | Wine grape | extracellular | 31.98 | 27.75 |
| VIT_11s0016g05640.t01 | Wine grape | cytosol | 25.38 | 27.17 |
| Solyc08g021820.2.1 | Tomato | nucleus | 30.96 | 26.87 |
| KRH52428 | Soybean | nucleus | 30.96 | 26.87 |
| Solyc06g066020.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 31.47 | 25.62 |
| EES00605 | Sorghum | nucleus, plastid | 24.87 | 25.39 |
| KRH61758 | Soybean | nucleus | 28.93 | 25.22 |
| CDX68829 | Canola | nucleus | 26.9 | 23.25 |
| Bra011332.1-P | Field mustard | nucleus | 26.9 | 22.94 |
| CDX75231 | Canola | nucleus | 26.9 | 22.94 |
| AT4G32280.1 | Thale cress | cytosol | 28.93 | 22.71 |
| KXG31359 | Sorghum | cytosol, nucleus, peroxisome | 34.01 | 22.64 |
| EES13224 | Sorghum | nucleus | 27.41 | 22.41 |
| CDX72351 | Canola | nucleus | 27.92 | 22.27 |
| CDY13478 | Canola | nucleus | 27.41 | 22.22 |
| Bra023958.1-P | Field mustard | nucleus | 27.41 | 22.22 |
| EES17832 | Sorghum | nucleus | 25.89 | 21.07 |
| OQU84670 | Sorghum | nucleus | 25.38 | 17.12 |
| KXG28215 | Sorghum | nucleus | 25.89 | 14.25 |
| KXG33336 | Sorghum | nucleus | 25.38 | 13.7 |
| OQU86163 | Sorghum | golgi, plastid | 24.87 | 13.69 |
| KXG22376 | Sorghum | nucleus | 21.83 | 12.46 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | UniProt:A0A194YSU1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 |
| EnsemblPlants:KXG31308 | ProteinID:KXG31308 | ProteinID:KXG31308.1 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF88 | EnsemblPlantsGene:SORBI_3004G336500 | SUPFAM:SSF54277 | UniParc:UPI0007F2B500 | SEG:seg |
Description
hypothetical protein
Coordinates
chr4:+:66846803..66847970
Molecular Weight (calculated)
20985.5 Da
IEP (calculated)
6.301
GRAVY (calculated)
-0.380
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MELELGLAPP SARHPIPMTI DHLTAEDELS STSSDHHHHP CAARAGKRAF AEAFQEAAAT TTTTLPLFDD GSSCGGTNGS SSKRPLVGWP PVSSARSRAC
101: GVGGAKYVKV KKEGDAIGRK VDLSLHASYD ELLATLSRMF PTTGCNKDDK EISSSSSSTS HVDVVVTYED GEGDWMLVGD VPWNDFARSV KRLKILG
101: GVGGAKYVKV KKEGDAIGRK VDLSLHASYD ELLATLSRMF PTTGCNKDDK EISSSSSSTS HVDVVVTYED GEGDWMLVGD VPWNDFARSV KRLKILG
001: MRGVSELEVG KSNLPAESEL ELGLGLSLGG GAWKERGRIL TAKDFPSVGS KRSAESSSHQ GASPPRSSQV VGWPPIGLHR MNSLVNNQAM KAARAEEGDG
101: EKKVVKNDEL KDVSMKVNPK VQGLGFVKVN MDGVGIGRKV DMRAHSSYEN LAQTLEEMFF GMTGTTCREK VKPLRLLDGS SDFVLTYEDK EGDWMLVGDV
201: PWRMFINSVK RLRIMGTSEA SGLAPRRQEQ KDRQRNNPV
101: EKKVVKNDEL KDVSMKVNPK VQGLGFVKVN MDGVGIGRKV DMRAHSSYEN LAQTLEEMFF GMTGTTCREK VKPLRLLDGS SDFVLTYEDK EGDWMLVGDV
201: PWRMFINSVK RLRIMGTSEA SGLAPRRQEQ KDRQRNNPV
Arabidopsis Description
IAA12Auxin-responsive protein IAA12 [Source:UniProtKB/Swiss-Prot;Acc:Q38830]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.