Subcellular Localization
min:
: max
Winner_takes_all: cytoskeleton, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc07g019450.2.1 | |
| Solyc07g042260.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G32280.1 | Solyc07g042260.2.1 | AT1G19220.1 | 21734647 |
| AT4G32280.1 | Solyc07g042260.2.1 | AT5G20730.1 | 21734647 |
| AT4G32280.1 | Solyc07g019450.2.1 | AT5G57420.1 | 21734647 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400052767 | Potato | cytosol, extracellular, nucleus | 35.95 | 95.6 |
| Solyc08g021820.2.1 | Tomato | nucleus | 50.83 | 54.19 |
| TraesCS7A01G129000.1 | Wheat | nucleus | 14.88 | 43.9 |
| TraesCS7D01G128200.1 | Wheat | cytosol, mitochondrion | 17.77 | 42.16 |
| Solyc07g008020.2.1 | Tomato | cytosol | 33.47 | 41.33 |
| VIT_04s0008g05560.t01 | Wine grape | extracellular | 38.02 | 40.53 |
| GSMUA_Achr9P26900_001 | Banana | plastid | 19.42 | 39.5 |
| KRH52428 | Soybean | nucleus | 35.54 | 37.89 |
| TraesCS7D01G127900.1 | Wheat | nucleus | 23.14 | 37.33 |
| KRH61758 | Soybean | nucleus | 34.71 | 37.17 |
| GSMUA_Achr9P26910_001 | Banana | nucleus | 21.9 | 36.55 |
| TraesCS7D01G127800.1 | Wheat | cytosol | 23.14 | 35.44 |
| TraesCS7D01G128100.1 | Wheat | nucleus | 22.73 | 34.38 |
| TraesCS7B01G029000.1 | Wheat | cytosol | 23.97 | 33.72 |
| Os02t0805100-01 | Rice | nucleus | 25.21 | 33.52 |
| Bra011332.1-P | Field mustard | nucleus | 31.82 | 33.33 |
| CDX75231 | Canola | nucleus | 31.82 | 33.33 |
| HORVU6Hr1G088140.2 | Barley | cytosol, mitochondrion, nucleus | 23.97 | 33.33 |
| CDX68829 | Canola | nucleus | 30.99 | 32.89 |
| Os06t0166500-01 | Rice | nucleus | 24.79 | 32.79 |
| HORVU7Hr1G026970.2 | Barley | cytosol | 22.73 | 32.74 |
| AT4G32280.1 | Thale cress | cytosol | 33.88 | 32.67 |
| TraesCS6D01G357500.1 | Wheat | cytosol, mitochondrion, nucleus | 23.14 | 32.56 |
| TraesCS7B01G029100.1 | Wheat | nucleus | 23.14 | 31.64 |
| TraesCS6B01G411000.1 | Wheat | cytosol, mitochondrion, nucleus | 23.14 | 31.64 |
| KXG31308 | Sorghum | cytosol | 25.62 | 31.47 |
| TraesCS6A01G373300.1 | Wheat | cytosol, nucleus, plastid | 22.73 | 31.43 |
| KXG19391 | Sorghum | nucleus | 26.03 | 30.88 |
| CDX72351 | Canola | nucleus | 30.99 | 30.36 |
| Zm00001d045203_P001 | Maize | cytosol | 26.86 | 30.09 |
| CDY13478 | Canola | nucleus | 30.17 | 30.04 |
| Bra023958.1-P | Field mustard | nucleus | 30.17 | 30.04 |
| Zm00001d000288_P001 | Maize | cytosol | 24.38 | 29.95 |
| Zm00001d018414_P001 | Maize | nucleus | 25.21 | 29.61 |
| Solyc12g096980.1.1 | Tomato | nucleus | 24.38 | 25.32 |
| Solyc09g090910.1.1 | Tomato | nucleus | 26.03 | 22.34 |
| Solyc03g121060.2.1 | Tomato | nucleus | 23.14 | 19.51 |
| Solyc09g064530.2.1 | Tomato | nucleus | 25.21 | 19.06 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | UniProt:G9HPX6 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 |
| EMBL:JN379455 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF44 |
| SUPFAM:SSF54277 | EnsemblPlantsGene:Solyc06g066020.2 | EnsemblPlants:Solyc06g066020.2.1 | UniParc:UPI000243DC13 | SEG:seg | : |
Description
Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:G9HPX6]
Coordinates
chr6:+:41376261..41378607
Molecular Weight (calculated)
28213.9 Da
IEP (calculated)
5.041
GRAVY (calculated)
-0.943
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MELELGLGLA LPNSNPIKYS YLNDNNINID TFDDNFSEMK KIDNDDYGSN KVEGKTLSLL IWNGQPNEEE EEDNDDGHQK RRYFEACYDQ EFKEENGVVG
101: WPPIKSWRKK LIHGINHEVG WNKNNNNNNN NNHRHNIGIR NSMYVKVKME GVAIGRKIDL MLYNSYQILT NTLLQMFNKS HESCDENDGR FTLLYQDKEG
201: DWMLAGDVPW ETFMETVQRI QILSNWKSGG STRKSSHIPQ QF
101: WPPIKSWRKK LIHGINHEVG WNKNNNNNNN NNHRHNIGIR NSMYVKVKME GVAIGRKIDL MLYNSYQILT NTLLQMFNKS HESCDENDGR FTLLYQDKEG
201: DWMLAGDVPW ETFMETVQRI QILSNWKSGG STRKSSHIPQ QF
001: MELDLGLSLS PHKSSKLGFN FDLNKHCAIE GAASCLGTEK LRFEATFGLG NVEENCYMPK QRLFALNGQP NEEDEDPLES ESSIVYDDEE ENSEVVGWPP
101: VKTCMIKYGS YHHRHIRNHH HCPYHHRGRR ITAMNNNISN PTTATVGSSS SSSISSRSSM YVKVKMDGVA IARKVDIKLF NSYESLTNSL ITMFTEYEDC
201: DREDTNYTFT FQGKEGDWLL RGDVTWKIFA ESVHRISIIR DRPCAYTRCL F
101: VKTCMIKYGS YHHRHIRNHH HCPYHHRGRR ITAMNNNISN PTTATVGSSS SSSISSRSSM YVKVKMDGVA IARKVDIKLF NSYESLTNSL ITMFTEYEDC
201: DREDTNYTFT FQGKEGDWLL RGDVTWKIFA ESVHRISIIR DRPCAYTRCL F
Arabidopsis Description
IAA29Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.