Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d026480_P001 | |
| Zm00001d045026_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G32280.1 | Zm00001d045026_P002 | AT1G19220.1 | 21734647 |
| AT4G32280.1 | Zm00001d045026_P002 | AT5G20730.1 | 21734647 |
| AT4G32280.1 | Zm00001d026480_P001 | AT5G57420.1 | 21734647 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG19391 | Sorghum | nucleus | 72.69 | 76.96 |
| Zm00001d000288_P001 | Maize | cytosol | 65.28 | 71.57 |
| TraesCS7D01G128200.1 | Wheat | cytosol, mitochondrion | 31.48 | 66.67 |
| TraesCS7D01G127900.1 | Wheat | nucleus | 43.06 | 62.0 |
| TraesCS7A01G129000.1 | Wheat | nucleus | 23.15 | 60.98 |
| TraesCS7D01G128100.1 | Wheat | nucleus | 44.44 | 60.0 |
| TraesCS7D01G127800.1 | Wheat | cytosol | 43.52 | 59.49 |
| TraesCS7B01G029100.1 | Wheat | nucleus | 48.61 | 59.32 |
| HORVU7Hr1G026970.2 | Barley | cytosol | 45.37 | 58.33 |
| TraesCS7B01G029000.1 | Wheat | cytosol | 46.3 | 58.14 |
| Os06t0166500-01 | Rice | nucleus | 48.15 | 56.83 |
| GSMUA_Achr9P26900_001 | Banana | plastid | 29.63 | 53.78 |
| GSMUA_Achr9P26910_001 | Banana | nucleus | 31.94 | 47.59 |
| Zm00001d018414_P001 | Maize | nucleus | 43.52 | 45.63 |
| PGSC0003DMT400052767 | Potato | cytosol, extracellular, nucleus | 17.59 | 41.76 |
| Zm00001d008201_P001 | Maize | cytosol | 18.52 | 30.77 |
| VIT_04s0008g05560.t01 | Wine grape | extracellular | 31.48 | 29.96 |
| PGSC0003DMT400079375 | Potato | cytosol | 27.78 | 29.7 |
| KRH03666 | Soybean | cytosol | 26.85 | 29.15 |
| KRH20139 | Soybean | nucleus | 27.78 | 29.13 |
| Solyc07g008020.2.1 | Tomato | cytosol | 26.39 | 29.08 |
| VIT_11s0016g05640.t01 | Wine grape | cytosol | 24.54 | 28.8 |
| PGSC0003DMT400035770 | Potato | cytosol | 28.7 | 28.31 |
| Solyc08g021820.2.1 | Tomato | nucleus | 28.7 | 27.31 |
| KRH52428 | Soybean | nucleus | 28.24 | 26.87 |
| Solyc06g066020.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 30.09 | 26.86 |
| KRH61758 | Soybean | nucleus | 27.78 | 26.55 |
| Zm00001d040541_P001 | Maize | nucleus, plastid | 21.76 | 25.97 |
| CDX68829 | Canola | nucleus | 25.93 | 24.56 |
| Zm00001d049715_P001 | Maize | nucleus | 26.39 | 24.46 |
| Zm00001d039513_P001 | Maize | cytosol, nucleus, plastid | 25.93 | 24.45 |
| Bra011332.1-P | Field mustard | nucleus | 25.93 | 24.24 |
| CDX75231 | Canola | nucleus | 25.93 | 24.24 |
| Zm00001d051911_P002 | Maize | nucleus | 32.41 | 23.81 |
| AT4G32280.1 | Thale cress | cytosol | 27.31 | 23.51 |
| CDX72351 | Canola | nucleus | 26.85 | 23.48 |
| CDY13478 | Canola | nucleus | 26.39 | 23.46 |
| Bra023958.1-P | Field mustard | nucleus | 26.39 | 23.46 |
| Zm00001d010360_P001 | Maize | cytosol, nucleus | 24.54 | 23.25 |
| Zm00001d037691_P003 | Maize | cytosol, nucleus | 24.54 | 21.46 |
| Zm00001d016277_P002 | Maize | nucleus | 25.46 | 18.39 |
| Zm00001d049141_P002 | Maize | nucleus | 23.61 | 14.37 |
| Zm00001d004697_P001 | Maize | nucleus | 22.69 | 14.04 |
| Zm00001d043515_P002 | Maize | cytosol, mitochondrion, nucleus | 22.69 | 13.73 |
| Zm00001d038784_P001 | Maize | nucleus | 21.3 | 13.03 |
Protein Annotations
| EntrezGene:107522023 | Gene3D:3.10.20.90 | MapMan:35.1 | ProteinID:AQL01825.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 |
| InterPro:IPR000270 | UniProt:K7V6I2 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 |
| PANTHER:PTHR31734:SF38 | SUPFAM:SSF54277 | UniParc:UPI00022136DA | EnsemblPlantsGene:Zm00001d045203 | EnsemblPlants:Zm00001d045203_P001 | EnsemblPlants:Zm00001d045203_T001 |
| SEG:seg | : | : | : | : | : |
Description
Aux/IAA-transcription factor 41Auxin-responsive protein IAA29
Coordinates
chr9:+:15993040..15994740
Molecular Weight (calculated)
23389.8 Da
IEP (calculated)
7.706
GRAVY (calculated)
-0.517
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MELELGLALP TRHRQPLAAG LLGGEAGARG TKRVFGEAFG SANKATLPLF LRDDDDGDRG GGGDRDGVGQ HDPNTKKTKR LLVGWPPVKC ARRSGGGGGY
101: VKVKMEGVAI GRKVDVSLHG SYQDLLRTLR RMFPSATQRG AGAGADHEEE EEEVVVEEVA SHERRRLHRP YVVTYEDGEG DWLLVGDDVP WEVFVKSVKR
201: LKILARTAAG DGLAHC
101: VKVKMEGVAI GRKVDVSLHG SYQDLLRTLR RMFPSATQRG AGAGADHEEE EEEVVVEEVA SHERRRLHRP YVVTYEDGEG DWLLVGDDVP WEVFVKSVKR
201: LKILARTAAG DGLAHC
001: MNLKETELCL GLPGGTETVE SPAKSGVGNK RGFSETVDLK LNLQSNKQGH VDLNTNGAPK EKTFLKDPSK PPAKAQVVGW PPVRNYRKNV MANQKSGEAE
101: EAMSSGGGTV AFVKVSMDGA PYLRKVDLKM YTSYKDLSDA LAKMFSSFTM GSYGAQGMID FMNESKVMDL LNSSEYVPSY EDKDGDWMLV GDVPWPMFVE
201: SCKRLRIMKG SEAIGLAPRA MEKFKNRS
101: EAMSSGGGTV AFVKVSMDGA PYLRKVDLKM YTSYKDLSDA LAKMFSSFTM GSYGAQGMID FMNESKVMDL LNSSEYVPSY EDKDGDWMLV GDVPWPMFVE
201: SCKRLRIMKG SEAIGLAPRA MEKFKNRS
Arabidopsis Description
IAA14indole-3-acetic acid inducible 14 [Source:TAIR;Acc:AT4G14550]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.