Factsheet for VIT_04s0008g05560.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1
nucleus 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_11s0016g00640.t01
VIT_11s0052g00870.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32280.1	VIT_11s0016g00640.t01	AT1G19220.1	21734647
AT4G32280.1	VIT_11s0016g00640.t01	AT5G20730.1	21734647
AT4G32280.1	VIT_11s0052g00870.t01	AT5G57420.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052767	Potato	cytosol, extracellular, nucleus	20.7	51.65
KRH61758	Soybean	nucleus	43.17	43.36
KRH52428	Soybean	nucleus	42.73	42.73
VIT_11s0016g05640.t01	Wine grape	cytosol	33.92	41.85
TraesCS7D01G128200.1	Wheat	cytosol, mitochondrion	18.5	41.18
PGSC0003DMT400035770	Potato	cytosol	37.89	39.27
Solyc08g021820.2.1	Tomato	nucleus	39.21	39.21
TraesCS7D01G128100.1	Wheat	nucleus	26.87	38.12
Solyc06g066020.2.1	Tomato	cytoskeleton, cytosol, nucleus	40.53	38.02
GSMUA_Achr9P26900_001	Banana	plastid	19.38	36.97
TraesCS7D01G127800.1	Wheat	cytosol	25.55	36.71
TraesCS7B01G029000.1	Wheat	cytosol	27.75	36.63
TraesCS7A01G129000.1	Wheat	nucleus	13.22	36.59
Os02t0805100-01	Rice	nucleus	28.63	35.71
HORVU6Hr1G088140.2	Barley	cytosol, mitochondrion, nucleus	27.31	35.63
Os06t0166500-01	Rice	nucleus	28.63	35.52
TraesCS7D01G127900.1	Wheat	nucleus	23.35	35.33
GSMUA_Achr9P26910_001	Banana	nucleus	22.03	34.48
TraesCS6D01G357500.1	Wheat	cytosol, mitochondrion, nucleus	25.99	34.3
HORVU7Hr1G026970.2	Barley	cytosol	25.11	33.93
TraesCS6A01G373300.1	Wheat	cytosol, nucleus, plastid	25.99	33.71
KXG19391	Sorghum	nucleus	29.96	33.33
TraesCS6B01G411000.1	Wheat	cytosol, mitochondrion, nucleus	25.99	33.33
TraesCS7B01G029100.1	Wheat	nucleus	25.99	33.33
Zm00001d000288_P001	Maize	cytosol	28.63	32.99
Bra011332.1-P	Field mustard	nucleus	32.6	32.03
CDX75231	Canola	nucleus	32.6	32.03
KXG31308	Sorghum	cytosol	27.75	31.98
Zm00001d045203_P001	Maize	cytosol	29.96	31.48
AT4G32280.1	Thale cress	cytosol	34.8	31.47
CDX68829	Canola	nucleus	30.84	30.7
Zm00001d018414_P001	Maize	nucleus	27.75	30.58
CDY13478	Canola	nucleus	32.16	30.04
Bra023958.1-P	Field mustard	nucleus	32.16	30.04
CDX72351	Canola	nucleus	32.6	29.96
VIT_07s0005g02550.t01	Wine grape	plastid	19.82	25.71
VIT_05s0020g01070.t01	Wine grape	plastid	20.26	23.23
VIT_07s0005g04380.t01	Wine grape	nucleus	25.55	18.95
VIT_05s0049g01970.t01	Wine grape	nucleus	25.11	17.76
VIT_04s0008g00220.t01	Wine grape	nucleus	23.79	15.65
VIT_09s0002g03410.t01	Wine grape	nucleus	24.23	12.53

Protein Annotations

EntrezGene:104879021	Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	ProteinID:CBI21052
ProteinID:CBI21052.3	UniProt:D7SUV3	EMBL:FN595231	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009628	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	GO:GO:0010114	GO:GO:0010218
InterPro:IPR000270	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF44
SUPFAM:SSF54277	UniParc:UPI00015C8569	ArrayExpress:VIT_04s0008g05560	EnsemblPlantsGene:VIT_04s0008g05560	EnsemblPlants:VIT_04s0008g05560.t01	RefSeq:XP_010648672.1

Description

Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:D7SUV3]

Coordinates

chr4:-:5035893..5039384

Molecular Weight (calculated)

25358.4 Da

IEP (calculated)

8.275

GRAVY (calculated)

-0.520

Length

227 amino acids

Sequence
(BLAST)

001: MELQLGLALP AYTPAVKVVE LKGCGNEAKQ KLGSQPWSFG CESYMKNKRG FGEAFEKIED HDHVSDGTSL PLLLWHGQPN DEDDHNGLGK RASCPINKNG
101: EEGNAVVGWP PVKSWRKKVI CQHQGGRMVF DRTAEKESGG AGPIYVKVKM EGVAIARKIN LKLYQSYQML KNSLTAMFAR CKKCDVDCVH YTLTYQDKEG
201: DWLLAGDVPW RTFIESVQRL ELVRNGG

Best Arabidopsis Sequence Match ( AT4G32280.1 )
(BLAST)

001: MELDLGLSLS PHKSSKLGFN FDLNKHCAIE GAASCLGTEK LRFEATFGLG NVEENCYMPK QRLFALNGQP NEEDEDPLES ESSIVYDDEE ENSEVVGWPP
101: VKTCMIKYGS YHHRHIRNHH HCPYHHRGRR ITAMNNNISN PTTATVGSSS SSSISSRSSM YVKVKMDGVA IARKVDIKLF NSYESLTNSL ITMFTEYEDC
201: DREDTNYTFT FQGKEGDWLL RGDVTWKIFA ESVHRISIIR DRPCAYTRCL F

Arabidopsis Description

IAA29Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.