Factsheet for VIT_11s0016g00640.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g04070.t01
VIT_02s0025g01740.t01
VIT_03s0180g00210.t01
VIT_05s0020g04680.t01
VIT_05s0020g04690.t01
VIT_07s0005g02550.t01
VIT_09s0002g03410.t01
VIT_09s0002g05150.t01
VIT_11s0016g00640.t01
VIT_11s0016g03540.t01
VIT_11s0052g00870.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19220.1	VIT_05s0020g04690.t01	AT1G04250.1	21734647
AT1G19220.1	VIT_01s0011g04070.t01	AT1G15050.1	21734647
AT1G19220.1	VIT_02s0025g01740.t01	AT1G35240.1	21734647
AT1G19220.1	VIT_09s0002g03410.t01	AT1G51950.1	18505759
AT1G19220.1	VIT_07s0005g02550.t01	AT2G46990.1	21734647
AT1G19220.1	VIT_05s0020g04690.t01	AT3G23050.1	21734647
AT1G19220.1	VIT_05s0020g04680.t01	AT4G14560.1	21734647
AT1G19220.1	VIT_05s0020g04680.t01	AT4G14560.1	9342315
AT1G19220.1	VIT_11s0052g00870.t01	AT5G57420.1	21734647
AT5G20730.1	VIT_05s0020g04690.t01	AT1G04250.1	21734647
AT5G20730.1	VIT_09s0002g03410.t01	AT1G51950.1	18505759
AT5G20730.1	VIT_09s0002g05150.t01	AT1G52830.1	14729917
AT5G20730.1	VIT_09s0002g05150.t01	AT3G15540.1	14729917
AT5G20730.1	VIT_09s0002g05150.t01	AT3G15540.1	21734647
AT5G20730.1	VIT_05s0020g04690.t01	AT3G23050.1	21734647
AT5G20730.1	VIT_03s0180g00210.t01	AT3G50060.1	17675404
AT5G20730.1	VIT_05s0020g04680.t01	AT4G14560.1	14729917
AT5G20730.1	VIT_05s0020g04680.t01	AT4G14560.1	21734647
AT5G20730.1	VIT_05s0020g04680.t01	AT4G14560.1	9342315
AT5G20730.1	VIT_11s0016g03540.t01	AT4G29080.1	21734647
AT5G20730.1	VIT_11s0016g00640.t01	AT5G20730.1	14729917

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12587	Soybean	nucleus	72.9	75.04
KRH37536	Soybean	nucleus	72.81	74.76
KRH02575	Soybean	nucleus	72.55	73.77
KRH19355	Soybean	nucleus	72.03	73.56
Solyc07g042260.2.1	Tomato	nucleus	70.39	71.5
PGSC0003DMT400006151	Potato	nucleus	70.56	70.44
AT1G19220.1	Thale cress	nucleus	62.68	66.67
Bra025720.1-P	Field mustard	nucleus	60.26	66.35
CDY26690	Canola	nucleus	60.26	66.35
CDX96672	Canola	nucleus	58.35	66.08
CDX83778	Canola	nucleus	58.27	65.98
CDY41030	Canola	nucleus	60.35	65.88
Bra016517.1-P	Field mustard	nucleus	57.49	65.74
Bra020125.1-P	Field mustard	nucleus	61.39	64.45
GSMUA_Achr9P18170_001	Banana	nucleus	47.53	64.29
AT5G20730.1	Thale cress	nucleus	64.07	63.52
CDX92437	Canola	nucleus	56.97	63.27
CDY45069	Canola	nucleus	60.17	62.44
GSMUA_Achr3P10240_001	Banana	nucleus	33.51	62.42
CDY16560	Canola	nucleus	52.38	58.06
Os06t0196700-02	Rice	nucleus	50.48	55.26
KXG19536	Sorghum	nucleus	50.13	54.99
TraesCS7D01G161900.1	Wheat	nucleus	50.48	54.74
Zm00001d045026_P002	Maize	nucleus	49.87	54.7
TraesCS7A01G160800.1	Wheat	nucleus	50.39	54.6
TraesCS7B01G065800.2	Wheat	plastid	50.22	53.65
HORVU7Hr1G033820.5	Barley	nucleus	48.48	52.53
VIT_11s0065g00310.t01	Wine grape	nucleus	49.96	51.75
VIT_10s0003g04100.t01	Wine grape	nucleus	38.61	49.12
Bra002327.1-P	Field mustard	nucleus	60.95	48.92
VIT_12s0028g01170.t01	Wine grape	nucleus	37.58	46.82
VIT_04s0079g00200.t01	Wine grape	nucleus	26.32	43.0
VIT_18s0001g13930.t01	Wine grape	nucleus	35.06	42.5
VIT_18s0089g00910.t01	Wine grape	nucleus	21.39	38.06
VIT_12s0035g01800.t01	Wine grape	nucleus	21.82	37.17
VIT_02s0025g01740.t01	Wine grape	nucleus	21.21	35.92
VIT_15s0046g00290.t01	Wine grape	nucleus	21.56	35.47
VIT_07s0104g01230.t01	Wine grape	nucleus	20.35	33.76
VIT_01s0244g00150.t01	Wine grape	nucleus	21.82	32.77
VIT_17s0000g00320.t01	Wine grape	nucleus	23.46	31.44
VIT_06s0004g03130.t01	Wine grape	nucleus	21.13	30.58

Protein Annotations

EntrezGene:100257618	wikigene:100257618	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90
EMBL:AM431582	InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ProteinID:CAN69277	ProteinID:CAN69277.1
ProteinID:CCB51377	ProteinID:CCB51377.1	InterPro:DNA-bd_pseudobarrel_sf	UniProt:F6HGM9	EMBL:FN595756	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	EntrezGene:LOC100257618
wikigene:LOC100257618	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863
PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF21	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277
UniParc:UPI00021081E2	ArrayExpress:VIT_11s0016g00640	EnsemblPlantsGene:VIT_11s0016g00640	EnsemblPlants:VIT_11s0016g00640.t01	unigene:Vvi.22985	RefSeq:XP_002276637
RefSeq:XP_002276637.1	RefSeq:XP_010656094.1	SEG:seg	:	:	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:F6HGM9]

Coordinates

chr11:+:629393..640201

Molecular Weight (calculated)

129585.0 Da

IEP (calculated)

6.718

GRAVY (calculated)

-0.739

Length

1155 amino acids

Sequence
(BLAST)

0001: MKAPPNGFLA GSGEGERKSI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE TECVPSYPNL PSKLICMLHN VTLHADAETD EVYAQMTLQP
0101: VSKYDKEALL ASDLGLKQSR QPVEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVARD LHDNTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS CDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYTQV SLGMRFRMMF
0301: ETEESGVRRY MGTITGISEL DAARWKNSQW RNLQVGWDES TAGERPSRVS IWEIEPVVTP FYLCPPPFFR PKFPKQPGFP DDESDIESAF KRGMPWLGDD
0401: FGMKDAPSSI FPGLNLVQWM SMQQNNQFPA SQSGLFPPMV SSTVLHSNLS TDDPSKLLSF QAPALSAPSL QFNKVNQQNQ VSQFQQPSLA WPQQQQQQQQ
0501: QQLQQLLQTP INPQQHPQQH QRQQQQQPQQ QHQQQQQQQQ HQQHPQQQQQ HQLQQLQQPQ LLLQQHQQLQ PQQQQQQQQQ QQPQHQQQQQ QQPPPHQQQH
0601: QPPQQQQPLQ QLFQPAFVNG GVSSNQILNQ NSQQPILYPQ LQPQQSLTGN TLSQQSIQSA SRNSFQLSSL PQDLQFQQQM EQQPSLVQRH QQPHTQMQQS
0701: SPQLLQHSSS QRPQQPQQPQ VQQSSQQNLP EHQLQLQYLQ KLQQQQLLSP VSPRLQPQQP QQQQANQQNQ SLQHLSLSQQ QLSSNSFSTS ALMQSQQIPM
0801: NQLQGQHKPI TAIRAHSGLT DGDAPSCSTS PSTNNCQVPS NFLNRNQQGP AILLGDSVVE PASNLVQELQ SKSDIRIKNE VPSSKVPDQL RYKGTVTDQL
0901: EASSSATSYC LDAGTLQQNF TLPTFCLDGD VQSNPQSNPP FAVNIDGLTP DTLLSRGFDS GKDLQNLLSN YGGTPRDIET ELSTAAISSQ SFGVPNMSFK
1001: PGCSNDVAIT ETGVLSNGLW TNQAQRMRTY TKVQKRGSVG RSIDVTRYKG YDELRHDLAR MFGIEGQLED PQRTDWKLVY VDHENDILLV GDDPWEEFVS
1101: CVQSIKILSS AEVQQMSLDG DLGHVPVPNQ ACSGTDSGNA WKGHYEDTSA ASFNR

Best Arabidopsis Sequence Match ( AT1G19220.1 )
(BLAST)

0001: MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR

Arabidopsis Description

ARF19Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.