Factsheet for VIT_01s0244g00150.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0523800-01	Rice	nucleus	33.68	70.77
VIT_17s0000g00320.t01	Wine grape	nucleus	66.97	59.74
GSMUA_Achr6P08090_001	Banana	nucleus	59.82	55.83
GSMUA_Achr10P...	Banana	nucleus	57.74	53.88
OQU83539	Sorghum	nucleus	55.79	52.64
TraesCS3D01G434700.1	Wheat	nucleus	53.84	52.01
TraesCS3B01G475800.1	Wheat	nucleus	53.71	51.88
TraesCS3A01G442000.1	Wheat	nucleus	53.45	51.57
Os01t0927600-01	Rice	nucleus	53.71	51.11
KXG34038	Sorghum	nucleus	53.84	51.11
GSMUA_Achr6P16450_001	Banana	nucleus	58.0	51.09
Os12t0479400-02	Rice	nucleus	55.79	51.01
VIT_18s0089g00910.t01	Wine grape	nucleus	42.65	50.54
Zm00001d011953_P002	Maize	nucleus	52.8	50.37
GSMUA_AchrUn_...	Banana	nucleus	57.87	50.34
Zm00001d042267_P003	Maize	nucleus	53.45	50.24
VIT_12s0035g01800.t01	Wine grape	nucleus	44.08	50.0
Zm00001d049295_P001	Maize	nucleus	56.31	49.43
TraesCS3A01G449300.3	Wheat	nucleus	53.06	49.22
TraesCS3B01G486000.2	Wheat	nucleus	52.8	49.15
HORVU3Hr1G097200.10	Barley	nucleus	52.93	48.17
EES17013	Sorghum	nucleus	52.28	47.91
VIT_02s0025g01740.t01	Wine grape	nucleus	42.39	47.8
Zm00001d023659_P007	Maize	nucleus	51.11	47.58
HORVU3Hr1G096410.4	Barley	nucleus, plastid	49.15	47.01
Zm00001d041056_P019	Maize	nucleus	51.11	46.56
TraesCS3D01G442000.7	Wheat	nucleus	53.58	46.5
VIT_15s0046g00290.t01	Wine grape	nucleus	41.48	45.44
HORVU3Hr1G096510.3	Barley	plastid	49.15	45.32
VIT_07s0104g01230.t01	Wine grape	nucleus	38.1	42.1
VIT_06s0004g03130.t01	Wine grape	nucleus	35.63	34.34
VIT_10s0003g04100.t01	Wine grape	nucleus	33.81	28.63
VIT_12s0028g01170.t01	Wine grape	nucleus	34.07	28.26
VIT_18s0001g13930.t01	Wine grape	nucleus	30.82	24.87
VIT_04s0079g00200.t01	Wine grape	nucleus	21.59	23.48
VIT_11s0065g00310.t01	Wine grape	nucleus	33.03	22.78
VIT_11s0016g00640.t01	Wine grape	nucleus	32.77	21.82

Protein Annotations

EntrezGene:100250592	wikigene:100250592	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ProteinID:CCB59117	ProteinID:CCB59117.1	InterPro:DNA-bd_pseudobarrel_sf
UniProt:F6HWQ3	EMBL:FN596277	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	EntrezGene:LOC100250592	wikigene:LOC100250592	InterPro:PB1_dom	PFAM:PF02309
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF35
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	TIGR:TC66259	TIGR:TC69496	TIGR:TC70940
UniParc:UPI0001982A91	ArrayExpress:VIT_01s0244g00150	EnsemblPlantsGene:VIT_01s0244g00150	EnsemblPlants:VIT_01s0244g00150.t01	unigene:Vvi.17139	RefSeq:XP_002268849
RefSeq:XP_002268849.1	RefSeq:XP_010656858.1	SEG:seg	:	:	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:F6HWQ3]

Coordinates

chr1:-:21717673..21724736

Molecular Weight (calculated)

86089.4 Da

IEP (calculated)

6.932

GRAVY (calculated)

-0.517

Length

769 amino acids

Sequence
(BLAST)

001: MDFVDSEDAL YKELWHACAG PLVTVPRVGE RVFYFPQGHL EQVEASTNQV ADQQMPAYDL RAKILCRVIN VHLKAESDTD EVFAQVTLLP EPKQDENSAE
101: KEDVLTPTPR PRVHSFCKTL TASDTSTHGG FSVLRRHADE CLPPLDMSKQ PPTQELVAKD LHGNEWRFRH IFRGQPRRHL LQSGWSLFVS SKKLVAGDAF
201: IFLRGENGEL RVGVRRAMRQ LSNGPSSVIS SHSMHLGVLA TAWHAVSTGT IFTVYYKPRT SPAEFIIPFD QYMEAVKNHY SIGMRFKMKF EGEEAPEQRF
301: TGTVIGTEDA DPMRWPGSKW RCLKVRWDET SSVPRPECVS PWNIEVALTP PSLNPLPVSR SKRPRANMMS SSTESSVLTR EGLSKVTIDH SPGSGFSRAL
401: QGQEISTLRG IFMENNNDLV TTQKSIVQPR SQVVDQMDSA STKRSFMSED WVPQLRQGVQ CANLISGPQS MMHSSTVLNM ESNVKLSEGA KGKPYPTPAN
501: VRYSGFSGYG GLHDLGAEQC PGNWLLPLLP HSYSETTPHL MGLKPQPLYV QEEVVKSKGD GNCKLFGISL ISKPAANPMH RPQGEIQLTM ENPARHPEQS
601: KSSKYMEIGG FEHEKPFQAL EQQLSRDDQS KLHSGSTRSC IKVHKQGIAV GRSVDLTKFN GYTELISELD QIFEFNGELI SLNKDWLIVF TDDEGDMMLV
701: GDDPWPEFCS MVRKIFVYTR EEIQRMDPRP LNPKVRENPT VLEKKGGAKE AKELETSLSS ESLGQGKSA

Best Arabidopsis Sequence Match ( AT5G62000.2 )
(BLAST)

001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS

Arabidopsis Description

ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.