Factsheet for HORVU3Hr1G097200.10

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G051860.1
HORVU3Hr1G026020.3
HORVU6Hr1G008360.2
HORVU6Hr1G046490.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62000.1	HORVU2Hr1G051860.1	AT4G18710.1	18599455
AT5G62000.1	HORVU3Hr1G026020.3	AT4G18710.1	18599455
AT5G62000.1	HORVU6Hr1G008360.2	AT4G18710.1	18599455
AT5G62000.1	HORVU6Hr1G046490.1	AT4G18710.1	18599455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G486000.2	Wheat	nucleus	92.31	94.43
TraesCS3A01G449300.3	Wheat	nucleus	91.01	92.76
TraesCS3D01G442000.7	Wheat	nucleus	91.72	87.47
Os01t0927600-01	Rice	nucleus	74.91	78.34
HORVU3Hr1G096410.4	Barley	nucleus, plastid	71.83	75.5
HORVU3Hr1G096510.3	Barley	plastid	71.95	72.9
KXG34038	Sorghum	nucleus	69.35	72.35
Zm00001d011953_P002	Maize	nucleus	68.52	71.84
Zm00001d042267_P003	Maize	nucleus	68.52	70.78
VIT_01s0244g00150.t01	Wine grape	nucleus	48.17	52.93
Solyc12g042070.1.1	Tomato	nucleus	50.41	51.45
PGSC0003DMT400037454	Potato	nucleus	50.18	51.15
VIT_17s0000g00320.t01	Wine grape	nucleus	51.95	50.93
Solyc03g118290.2.1	Tomato	nucleus	50.77	50.71
PGSC0003DMT400036765	Potato	nucleus	50.41	50.41
CDX87230	Canola	nucleus	48.99	50.0
KRH59742	Soybean	nucleus	50.65	49.88
KRH41062	Soybean	nucleus	50.06	49.71
KRH54110	Soybean	nucleus	49.47	49.58
AT5G62000.1	Thale cress	nucleus	50.18	49.36
KRH63855	Soybean	nucleus	49.11	49.23
CDX86939	Canola	nucleus	49.47	49.18
Bra010048.1-P	Field mustard	nucleus	49.47	49.12
CDY00245	Canola	nucleus	49.47	49.12
CDY67247	Canola	nucleus	49.11	48.77
CDY16798	Canola	nucleus	49.11	47.32
Bra035910.1-P	Field mustard	nucleus	49.11	46.73
HORVU2Hr1G076920.3	Barley	nucleus	36.45	46.11
HORVU3Hr1G032230.6	Barley	nucleus, plastid	31.24	33.0
HORVU5Hr1G009650.20	Barley	nucleus	30.3	28.73
HORVU2Hr1G121110.32	Barley	nucleus	28.17	28.4
HORVU6Hr1G026730.9	Barley	nucleus	30.06	27.34
HORVU7Hr1G106280.1	Barley	nucleus	30.06	27.08
HORVU2Hr1G109650.18	Barley	nucleus	27.22	24.03
HORVU7Hr1G033820.5	Barley	nucleus	30.3	24.02
HORVU7Hr1G051930.4	Barley	nucleus	29.47	22.99
HORVU6Hr1G020330.30	Barley	nucleus	30.65	22.7
HORVU7Hr1G096460.7	Barley	mitochondrion, nucleus, vacuole	30.65	21.55

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.40.330.10	Gene3D:3.10.20.90	UniProt:A0A287MFU7	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987
EnsemblPlantsGene:HORVU3Hr1G097200	EnsemblPlants:HORVU3Hr1G097200.10	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom
PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384
PANTHER:PTHR31384:SF8	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000B4867C4	SEG:seg

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A287MFU7]

Coordinates

chrchr3H:+:655379314..655383919

Molecular Weight (calculated)

94788.3 Da

IEP (calculated)

6.627

GRAVY (calculated)

-0.582

Length

845 amino acids

Sequence
(BLAST)

001: PPQGTSTGDP LYDELWHACA GPLVTVPRVG DMVYYFPQGH IEQVEASMNQ VAANQMRLYD LPSKLLCRVL NVELKAEADT DEVYAQVMLM PEPEQSEAAT
101: TTTEKSSSAT GGTMPARPAV RSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMTQSPPT QELVAKDLHG MEWRFRHIFR GQPRRHLLQS GWSVFVSSKR
201: LVAGDAFIFL RGESGELRVG VRRAMRQLSN IASSVISSHS MHLGVLATAW HAINTKTMFT VYYKPRTSRS EFIIPYDKYT ESVKNIYSIG TRFKMRFEGE
301: EAPEQRLLLY LLSLQSWFCL HYPSSSIICC RHLSCRFTGT IVGSDNLDQL WPESSWRSLK VRWDESSTIP RPDRVSPWEI EPASSPPVNP LPLSRAKRSR
401: PNVPPASPES SVRTKEGATK ADMDCAQAQR NQNNTVLPGH EQRSNKLTDI NDFDATVQKP MVWSTPPPNI GKNNPLTFQQ RPSVHNSIQL RRREADFKDA
501: SSGAQHFGDS LGFFMQTTFD EAPNRLGSFK NQFQDHSYAR QFADPYLFMH QQPSLTVESS RKMHTENNEL HFWNGPGTVY GNSIDHVQDF RFKEHPSNWL
601: SPQFSRAEQP RVIRPHASIA PIELEKTTEG SDFKIFGFKV DTASAGFNHL NSPMAATHEP VLQTQPSVSL DHLQTDCSPE VSLSIAGTTD NEKNIQQCPQ
701: SSKDVQSKSH GASTRSCTKV HKQGVALGRS VDLSKFVDYD ELTAELDKMF DFDGELMSSN KNWQIVYTDN EGDMMLVGDD PWEEFCSMVR KICIYTKEEV
801: QKMNSKPSDA RKEEGSVEGD GATEKAHLPV SSDLNSSQLG CVKAD

Best Arabidopsis Sequence Match ( AT5G62000.1 )
(BLAST)

001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS

Arabidopsis Description

ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.