Factsheet for HORVU6Hr1G020330.30

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G102300.1	Wheat	nucleus	96.49	97.52
TraesCS6B01G141300.2	Wheat	nucleus	96.49	97.35
TraesCS6A01G113000.1	Wheat	nucleus	96.76	97.27
Os02t0141100-00	Rice	nucleus	78.97	80.73
OQU84350	Sorghum	nucleus	74.93	79.91
Zm00001d015243_P001	Maize	nucleus	74.23	77.56
HORVU7Hr1G096460.7	Barley	mitochondrion, nucleus, vacuole	72.57	68.89
GSMUA_Achr3P05460_001	Banana	nucleus	58.37	68.45
GSMUA_Achr9P14090_001	Banana	nucleus	53.81	67.47
GSMUA_Achr5P05010_001	Banana	nucleus	48.38	63.38
GSMUA_Achr8P23850_001	Banana	nucleus	56.88	60.82
VIT_11s0065g00310.t01	Wine grape	nucleus	56.18	57.49
HORVU7Hr1G051930.4	Barley	nucleus	53.2	56.05
Solyc07g016180.2.1	Tomato	nucleus	54.43	55.85
PGSC0003DMT400025312	Potato	nucleus	54.16	55.48
KRH49070	Soybean	nucleus	51.53	52.97
PGSC0003DMT400035592	Potato	nucleus	50.92	52.96
Solyc05g047460.2.1	Tomato	nucleus	50.92	52.96
KRH74145	Soybean	nucleus	51.01	52.72
KRH60117	Soybean	nucleus	48.82	50.68
KRH41404	Soybean	nucleus	48.9	50.13
HORVU7Hr1G033820.5	Barley	nucleus	40.93	43.81
HORVU2Hr1G121110.32	Barley	nucleus	32.08	43.68
HORVU7Hr1G106280.1	Barley	nucleus	35.58	43.28
HORVU6Hr1G026730.9	Barley	nucleus	34.36	42.2
HORVU5Hr1G009650.20	Barley	nucleus	32.43	41.53
HORVU2Hr1G076920.3	Barley	nucleus	21.91	37.43
HORVU2Hr1G109650.18	Barley	nucleus	29.62	35.32
HORVU3Hr1G097200.10	Barley	nucleus	22.7	30.65
HORVU3Hr1G096410.4	Barley	nucleus, plastid	20.95	29.73
HORVU3Hr1G096510.3	Barley	plastid	21.12	28.9
HORVU3Hr1G032230.6	Barley	nucleus, plastid	20.07	28.62

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	UniProt:A0A287TJ05	InterPro:AUX/IAA_dom
InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987
EnsemblPlantsGene:HORVU6Hr1G020330	EnsemblPlants:HORVU6Hr1G020330.30	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom
PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384
PANTHER:PTHR31384:SF14	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000B46BDAB	SEG:seg

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A287TJ05]

Coordinates

chrchr6H:-:56980561..56987679

Molecular Weight (calculated)

126344.0 Da

IEP (calculated)

6.324

GRAVY (calculated)

-0.504

Length

1141 amino acids

Sequence
(BLAST)

0001: AAMAQSPASS AVVGASAPSE VSVADAAAGA GERKAPAING ELWHACAGPL VSLPPVGSLV VYFPQGHSEQ VAASMQKDVE AHVPSYPNLP SKLICLLHSV
0101: TLQADPDTDE VYAQMTLQPV NTYAKEALQL SELALRQARP QMEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPSLDFSLQP PCQELQARDI HDNVWTFRHI
0201: FRGQPKRHLL TTGWSLFVSG KKLFAGDSVI FVRDEKQQLL LGIRRANRQP TNISSSVLSS DSMHIGVLAA AAHASANTSP FTIFYNPRAS PTEFVIPFAK
0301: YQKAMYSNQI SLGMRFRMMC ETEELGTRRY MGTITGISDL DPVRWKNSQW RSLQVGWDES AAGERRNRVS IWEIEPLAAP FFICPQPFFG VKRPRQLDDE
0401: SLEMENLFKR AMPWLGEEVC IKDPQTQSAT MPGLSLVQWM NMNRQQSSSL ASTSMQSEYL RSASNPAMQN IGAADLARQL YMQNHILQQN SMQFNPPKLH
0501: QQMKPINDLS NAALPLNQLG AIRNHQDQKQ DQQRQQQSSI QAIPLSQAQA QTNIVQAQVI LQNQMQQQKQ PPPSPTQNQH GASGQHLLQS HQLQDQNLQM
0601: QQQQLLLHQQ LQQQQQQQLN KLPGQLANLA SQQTQLSDQE LHLQLLQKLQ QQSLMSQSAV TLSRLPIIQE QQNFLVEMQQ QLSNSHSLAQ QQVMPQQDCR
0701: TSSLQTTQLP PPIQQEQQQQ KPSQKQVAPT YVSEAAFPQI SSTSVIPKTG NTMIVPGAAQ SALTEEIPSC STSPSTANGS HLAQPTIGRN EHCKISTEKV
0801: PHSTAQMSIL TPIEAVSVTP VTTKELPKLN NSVKSSAISS KLPNVVSGLQ NFMNNALPTD NLETASSATS LWPSQSDGLL HQGFATSNFN QHQMFKDELP
0901: DVEIQGVDPS NSALFGMNSD GPLGFPMETE GLLENALDSV KYQNHFSTDD ENNYRMQKDA RQEISTSMVS QSFGQSDMAF NSIDSAINDG ALMNRNSWPP
1001: AAPPQRMRTF TKVYKRGAVG RSIDIGRFSG YGELNQALAR MFGIEGQLED RQRIGWKLVY TDHEDDVLLL GDDPWEEFVN CVKCIRILSP QEVQKMSLDG
1101: DLGSNVLPNQ ACSSSDGGNT WKPRYDQNSG NPSIGPYDQF E

Best Arabidopsis Sequence Match ( AT1G19220.1 )
(BLAST)

0001: MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR

Arabidopsis Description

ARF19Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.