Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400035592 | Potato | nucleus | 97.45 | 97.45 |
| Solyc07g016180.2.1 | Tomato | nucleus | 79.12 | 78.06 |
| VIT_11s0065g00310.t01 | Wine grape | nucleus | 72.56 | 71.39 |
| KRH49070 | Soybean | nucleus | 66.36 | 65.59 |
| Solyc12g006350.1.1 | Tomato | nucleus | 11.03 | 65.05 |
| KRH74145 | Soybean | nucleus | 63.81 | 63.41 |
| KRH60117 | Soybean | nucleus | 61.71 | 61.6 |
| KRH41404 | Soybean | nucleus | 61.71 | 60.83 |
| GSMUA_Achr3P05460_001 | Banana | nucleus | 53.24 | 60.02 |
| Os08t0520500-01 | Rice | cytosol | 2.73 | 60.0 |
| GSMUA_Achr9P14090_001 | Banana | nucleus | 49.23 | 59.34 |
| Os08t0520550-01 | Rice | nucleus | 33.73 | 58.08 |
| Os06t0702600-01 | Rice | nucleus | 51.5 | 57.01 |
| Solyc07g043620.2.1 | Tomato | nucleus | 26.71 | 55.81 |
| GSMUA_Achr5P05010_001 | Banana | nucleus | 44.03 | 55.45 |
| GSMUA_Achr6P01740_001 | Banana | nucleus | 50.96 | 53.8 |
| GSMUA_Achr8P23850_001 | Banana | nucleus | 51.32 | 52.76 |
| EER90336 | Sorghum | nucleus | 55.33 | 52.37 |
| Os02t0141100-00 | Rice | nucleus | 53.24 | 52.33 |
| TraesCS7D01G250100.4 | Wheat | nucleus | 52.05 | 52.29 |
| TraesCS7A01G252000.2 | Wheat | nucleus | 51.69 | 52.16 |
| Zm00001d031522_P007 | Maize | nucleus | 51.5 | 52.03 |
| TraesCS7B01G138900.6 | Wheat | nucleus | 51.87 | 52.01 |
| HORVU7Hr1G051930.4 | Barley | nucleus | 51.23 | 51.89 |
| EES15359 | Sorghum | nucleus | 51.41 | 51.51 |
| TraesCS6D01G102300.1 | Wheat | nucleus | 52.96 | 51.46 |
| TraesCS7D01G409700.1 | Wheat | nucleus | 55.06 | 51.4 |
| TraesCS7A01G416400.1 | Wheat | nucleus | 54.88 | 51.32 |
| TraesCS6B01G141300.2 | Wheat | nucleus | 52.87 | 51.28 |
| TraesCS7B01G316600.1 | Wheat | nucleus | 54.88 | 51.28 |
| TraesCS6A01G113000.1 | Wheat | nucleus | 53.05 | 51.28 |
| HORVU6Hr1G020330.30 | Barley | nucleus | 52.96 | 50.92 |
| OQU84350 | Sorghum | nucleus | 49.59 | 50.84 |
| Zm00001d014690_P014 | Maize | nucleus | 54.51 | 50.08 |
| HORVU7Hr1G096460.7 | Barley | mitochondrion, nucleus, vacuole | 54.6 | 49.83 |
| Zm00001d015243_P001 | Maize | nucleus | 48.59 | 48.81 |
| Solyc02g037530.2.1 | Tomato | nucleus | 34.55 | 45.01 |
| Solyc07g042260.2.1 | Tomato | nucleus | 46.22 | 44.59 |
| Solyc03g031970.2.1 | Tomato | nucleus | 34.28 | 44.55 |
| Solyc04g081240.2.1 | Tomato | nucleus | 34.0 | 40.11 |
| Solyc01g103050.2.1 | Tomato | nucleus | 22.06 | 37.0 |
| Solyc08g082630.2.1 | Tomato | nucleus | 20.15 | 34.32 |
| Solyc01g096070.2.1 | Tomato | nucleus | 21.51 | 34.25 |
| Solyc08g008380.2.1 | Tomato | nucleus | 21.15 | 33.97 |
| Solyc12g042070.1.1 | Tomato | nucleus | 24.89 | 32.97 |
| Solyc03g118290.2.1 | Tomato | nucleus | 24.34 | 31.56 |
| Solyc11g069190.1.1 | Tomato | nucleus | 21.79 | 29.47 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:Auxin_resp |
| InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 |
| InterPro:IPR003340 | InterPro:IPR015300 | UniProt:K4C0Y0 | InterPro:PB1_dom | PFAM:PF02309 | PFAM:PF02362 |
| PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF9 | SMART:SM01019 |
| SUPFAM:SSF101936 | SUPFAM:SSF54277 | EnsemblPlantsGene:Solyc05g047460.2 | EnsemblPlants:Solyc05g047460.2.1 | UniParc:UPI0002766C93 | SEG:seg |
Description
Auxin response factor [Source:UniProtKB/TrEMBL;Acc:K4C0Y0]
Coordinates
chr5:-:58904394..58910449
Molecular Weight (calculated)
120904.0 Da
IEP (calculated)
6.377
GRAVY (calculated)
-0.574
Length
1097 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKTPGNGAGG GNVNPAEGEK KNLNPELWQA CAGPLVNLPV AGTHVVYFPQ GHSEQVAASI KKDVEAQIPN YPNLPAKLIC LLHNVTLHAD PETDEVYAQM
0101: TLQPVPSFDK EALLRSDLSM KANKPQPEFF CKTLTASDTS THGGFSVPRR AAEKIFPPLD YSLQPPAQEL VARDLHDNIW TFRHVYRGQP KRHLLTTGWS
0201: LVVSGKRLFA GDSVLFIRDE KHQFLLGIRK ANRQPTNLSS SVLSSDSMHI GILAAAAHAA ANNSPFTVFY NPRAGPSEFV IPLAKYYKAT YSSQISLGMR
0301: FRMMFETEES GTRRYMGTIT GISDLDPVRW KNSQWRNLQV GWDESTAGER INRVSIWEIE PITAPFLICS SPFFSSKRPR QPGMPDGDYS DMDGMFKRTM
0401: PWLGDDFGMA DPQGLPGLSL IQWMNMQKNP SLANPMIPNY MNSLSGSALQ NLAGADLSRQ LGMAAPQFQQ QQQMQHNLQF NNAHRPNQQL DQLQKLPAAA
0501: LNSLDSIMQS QQQLSDVSQQ PRQNLTTQSL PTTQVHTQHI QAQSLGQSQN VLPPQQSVQN QNQLQRNLPQ SLSQQHPQQQ ILGQTQQQSF MSSQAPDPVN
0601: QQQHFSDNQA QLQMLQKLHQ QQKSLLAQQS GLQQPSQLGS IQDHQKQLMD ASQNFSRSLA TNQMLDASQT TSTSLPHSQV VQQQMTRINS PSNLRFSQPT
0701: QQPKLQQQQS GNLSDLSGPV NYPLPRTSYQ LSANGSNLTG TAGGGQSVVI DDVPSWSTSV STNNCHSVVQ PNMNGRITGA RDEMTHCSGP LEVMSANNNL
0801: QPKSDVKPSV NVVSKSQNHG FLAPQTLNTS GIQFDYLDSS SSATSACLSQ NDVQLQQTAT DPLSGSSQPL IFRDSPDGGE VQGDPRNNVA FGAANMENNQ
0901: LGLPMIPDPL ITKSSMGSRK DFSDNLSSGG GMLSSYENPK EAQPELLASM ASDYVTFNSI DSTINDGSFM DRGAWEPPPQ LPRLRTYTKV YKRGAVGRSI
1001: DIARYSGYEE LKLDLARRFG IEGQLEDRQR IGWKLVYVDH ENDVLLVGDD PWEEFVSCVR CIKILSPQEV QQMSLDGDFG GSVLQNQDCS SSDAGDV
0101: TLQPVPSFDK EALLRSDLSM KANKPQPEFF CKTLTASDTS THGGFSVPRR AAEKIFPPLD YSLQPPAQEL VARDLHDNIW TFRHVYRGQP KRHLLTTGWS
0201: LVVSGKRLFA GDSVLFIRDE KHQFLLGIRK ANRQPTNLSS SVLSSDSMHI GILAAAAHAA ANNSPFTVFY NPRAGPSEFV IPLAKYYKAT YSSQISLGMR
0301: FRMMFETEES GTRRYMGTIT GISDLDPVRW KNSQWRNLQV GWDESTAGER INRVSIWEIE PITAPFLICS SPFFSSKRPR QPGMPDGDYS DMDGMFKRTM
0401: PWLGDDFGMA DPQGLPGLSL IQWMNMQKNP SLANPMIPNY MNSLSGSALQ NLAGADLSRQ LGMAAPQFQQ QQQMQHNLQF NNAHRPNQQL DQLQKLPAAA
0501: LNSLDSIMQS QQQLSDVSQQ PRQNLTTQSL PTTQVHTQHI QAQSLGQSQN VLPPQQSVQN QNQLQRNLPQ SLSQQHPQQQ ILGQTQQQSF MSSQAPDPVN
0601: QQQHFSDNQA QLQMLQKLHQ QQKSLLAQQS GLQQPSQLGS IQDHQKQLMD ASQNFSRSLA TNQMLDASQT TSTSLPHSQV VQQQMTRINS PSNLRFSQPT
0701: QQPKLQQQQS GNLSDLSGPV NYPLPRTSYQ LSANGSNLTG TAGGGQSVVI DDVPSWSTSV STNNCHSVVQ PNMNGRITGA RDEMTHCSGP LEVMSANNNL
0801: QPKSDVKPSV NVVSKSQNHG FLAPQTLNTS GIQFDYLDSS SSATSACLSQ NDVQLQQTAT DPLSGSSQPL IFRDSPDGGE VQGDPRNNVA FGAANMENNQ
0901: LGLPMIPDPL ITKSSMGSRK DFSDNLSSGG GMLSSYENPK EAQPELLASM ASDYVTFNSI DSTINDGSFM DRGAWEPPPQ LPRLRTYTKV YKRGAVGRSI
1001: DIARYSGYEE LKLDLARRFG IEGQLEDRQR IGWKLVYVDH ENDVLLVGDD PWEEFVSCVR CIKILSPQEV QQMSLDGDFG GSVLQNQDCS SSDAGDV
0001: MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR
Arabidopsis Description
ARF19Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.