Factsheet for Os06t0702600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90336	Sorghum	nucleus	86.48	73.94
TraesCS7D01G409700.1	Wheat	nucleus	86.48	72.94
TraesCS7B01G316600.1	Wheat	nucleus	86.28	72.83
TraesCS7A01G416400.1	Wheat	nucleus	86.18	72.8
Zm00001d014690_P014	Maize	nucleus	85.67	71.11
HORVU7Hr1G096460.7	Barley	mitochondrion, nucleus, vacuole	84.16	69.38
GSMUA_Achr3P05460_001	Banana	nucleus	67.31	68.55
Os02t0141100-00	Rice	nucleus	75.78	67.29
Os08t0520500-01	Rice	cytosol	3.33	66.0
Os08t0520550-01	Rice	nucleus	42.28	65.78
GSMUA_Achr9P14090_001	Banana	nucleus	58.53	63.74
GSMUA_Achr5P05010_001	Banana	nucleus	54.29	61.77
GSMUA_Achr8P23850_001	Banana	nucleus	63.77	59.23
VIT_11s0065g00310.t01	Wine grape	nucleus	63.57	56.5
Solyc07g016180.2.1	Tomato	nucleus	61.35	54.68
PGSC0003DMT400025312	Potato	nucleus	61.15	54.4
PGSC0003DMT400035592	Potato	nucleus	57.42	51.87
Solyc05g047460.2.1	Tomato	nucleus	57.01	51.5
KRH49070	Soybean	nucleus	57.32	51.17
KRH74145	Soybean	nucleus	55.9	50.18
KRH60117	Soybean	nucleus	53.78	48.5
Os11t0523800-01	Rice	nucleus	17.66	47.81
KRH41404	Soybean	nucleus	53.58	47.71
Os06t0196700-02	Rice	nucleus	48.13	45.21
Os04t0671900-01	Rice	nucleus	36.13	43.77
Os02t0164900-01	Rice	nucleus	39.15	42.73
Os06t0677800-01	Rice	nucleus	39.46	42.64
Os12t0613700-01	Rice	nucleus	38.45	42.38
Os02t0557200-01	Rice	nucleus	25.83	37.76
Os04t0442000-01	Rice	nucleus	24.72	36.4
Os04t0664400-01	Rice	nucleus	32.59	35.11
Os01t0927600-01	Rice	nucleus	26.64	32.67
Os01t0236300-01	Rice	nucleus	21.9	31.04
Os12t0479400-02	Rice	nucleus	25.73	30.32

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	ProteinID:BAD53792.1	ProteinID:BAD54030.1	ProteinID:BAS99363.1	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300
EnsemblPlantsGene:Os06g0702600	EnsemblPlants:Os06t0702600-01	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507
PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF14	SMART:SM01019	SUPFAM:SSF101936
SUPFAM:SSF54277	UniParc:UPI0000446E83	SEG:seg	:	:	:

Description

AUXIN RESPONSE FACTOR 7AAuxin response factor 19, Control of leaf angle (Os06t0702600-01)

Coordinates

chr6:+:29657101..29665060

Molecular Weight (calculated)

110437.0 Da

IEP (calculated)

6.386

GRAVY (calculated)

-0.547

Length

991 amino acids

Sequence
(BLAST)

001: MMKQAQQQPP PPPASSAATT TTAMAAAAAA AVVGSGCEGE KTKAPAINSE LWHACAGPLV SLPPAGSLVV YFPQGHSEQV AASMQKDVDA HVPSYPNLPS
101: KLICLLHNVT LHADPETDEV YAQMTLQPVT SYGKEALQLS ELALKQARPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDFSMQPP AQELQARDLH
201: DNVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVIF VRDEKQQLLL GIRRANRQPT NISSSVLSSD SMHIGILAAA AHAAANNSPF TIFYNPRASP
301: TEFVIPFAKY QKAVYGNQIS LGMRFRMMFE TEELGTRRYM GTITGISDLD PVRWKNSQWR NLQVGWDESA AGERRNRVSI WEIEPVAAPF FICPPPFFGA
401: KRPRQLDDES SEMENLLKRA MPWLGEEICI KDPQTQNTIM PGLSLVQWMN MNMQQSSSFA NTAMQSEYLR SLSNPNMQNL GAADLSRQLC LQNQLLQQNN
501: IQFNTPKLSQ QMQPVNELAK AGIPLNQLGV STKPQEQIHD ASNLQRQQPS MNHMLPLSQA QTNLGQAQVL VQNQMQQQHA SSTQGQQPAT SQPLLLPQQQ
601: QQQQQQQQQQ QQQQQQQKLL QQQQQQLLLQ QQQQLSKMPA QLSSLANQQF QLTDQQLQLQ LLQKLQQQQQ SLLSQPAVTL AQLPLIQEQQ KLLLDMQQQL
701: SNSQTLSQQQ MMPQQSTKVP SQNDGLLHQN FPMSNFNQPQ MFKDAPPDAE IHAANTSNNA LFGINGDGPL GFPIGLGTDD FLSNGIDAAK YENHISTEID
801: NSYRIPKDAQ QEISSSMVSQ SFGASDMAFN SIDSTINDGG FLNRSSWPPA APLKRMRTFT KVYKRGAVGR SIDMSQFSGY DELKHALARM FSIEGQLEER
901: QRIGWKLVYK DHEDDILLLG DDPWEEFVGC VKCIRILSPQ EVQQMSLEGC DLGNNIPPNQ ACSSSDGGNA WRARCDQNSG NPSNGSYEQF E

Best Arabidopsis Sequence Match ( AT1G19220.1 )
(BLAST)

0001: MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR

Arabidopsis Description

ARF19Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.