Factsheet for Os12t0479400-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 12369618

gfp PMID: 12369618 doi

F Waller, M Furuya, P Nick

Institut für Biologie II, Albert-Ludwigs-Universität, Freiburg.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0205700-01
Os05t0207500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62000.1	Os01t0205700-01	AT4G18710.1	18599455
AT5G62000.1	Os05t0207500-01	AT4G18710.1	18599455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0523800-01	Rice	nucleus	34.72	79.78
EES17013	Sorghum	nucleus	72.41	72.59
Zm00001d041056_P019	Maize	nucleus	69.92	69.67
Zm00001d023659_P007	Maize	nucleus	68.25	69.49
GSMUA_Achr6P08090_001	Banana	nucleus	59.81	61.04
GSMUA_Achr10P...	Banana	nucleus	58.74	59.95
GSMUA_Achr6P16450_001	Banana	nucleus	59.1	56.93
VIT_01s0244g00150.t01	Wine grape	nucleus	51.01	55.79
GSMUA_AchrUn_...	Banana	nucleus	57.07	54.3
VIT_17s0000g00320.t01	Wine grape	nucleus	55.41	54.06
PGSC0003DMT400037454	Potato	nucleus	53.03	53.8
Solyc12g042070.1.1	Tomato	nucleus	52.79	53.62
KRH54110	Soybean	nucleus	53.63	53.5
KRH59742	Soybean	nucleus	54.34	53.26
PGSC0003DMT400036765	Potato	nucleus	53.51	53.25
KRH41062	Soybean	nucleus	53.86	53.23
Solyc03g118290.2.1	Tomato	nucleus	53.39	53.07
KRH63855	Soybean	nucleus	53.15	53.02
Os01t0927600-01	Rice	nucleus	49.94	51.98
CDX87230	Canola	nucleus	50.65	51.45
CDX86939	Canola	nucleus	51.13	50.59
Os02t0557200-01	Rice	nucleus	40.67	50.44
Bra010048.1-P	Field mustard	nucleus	51.01	50.41
CDY00245	Canola	nucleus	51.01	50.41
CDY67247	Canola	nucleus	51.01	50.41
AT5G62000.1	Thale cress	nucleus	51.37	50.29
Os04t0442000-01	Rice	nucleus	40.19	50.22
CDY16798	Canola	nucleus	50.42	48.35
Bra035910.1-P	Field mustard	nucleus	51.01	48.31
Os01t0236300-01	Rice	nucleus	32.94	39.63
Os04t0671900-01	Rice	nucleus	29.96	30.81
Os08t0520550-01	Rice	nucleus	22.95	30.3
Os06t0677800-01	Rice	nucleus	31.99	29.33
Os02t0164900-01	Rice	nucleus	31.15	28.85
Os12t0613700-01	Rice	nucleus	30.8	28.81
Os04t0664400-01	Rice	nucleus	28.18	25.76
Os06t0702600-01	Rice	nucleus	30.32	25.73
Os02t0141100-00	Rice	nucleus	32.34	24.37
Os06t0196700-02	Rice	nucleus	30.2	24.08
Os08t0520500-01	Rice	cytosol	0.95	16.0

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:4352211	ProteinID:ABA98246.1
ProteinID:ABA98247.1	EMBL:AK065254	EMBL:AK067061	InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd
ProteinID:BAF29784.1	ProteinID:BAT17132.1	ProteinID:BAT17133.1	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	EnsemblPlantsGene:Os12g0479400	EnsemblPlants:Os12t0479400-02
InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745
PANTHER:PTHR31384	PANTHER:PTHR31384:SF40	UniProt:Q2QQX6	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277
UniParc:UPI000068112A	RefSeq:XP_015620411.1	RefSeq:XP_015620412.1	RefSeq:XP_015620413.1	SEG:seg	:

Description

AUXIN RESPONSE FACTOR 24Similar to Auxin response factor 1. (Os12t0479400-01);Similar to Auxin response factor 24. (Os12t0479400-02);Similar to Isoform 2 of Auxin response factor 24. (Os12t0479400-03)

Coordinates

chr12:-:17571864..17577699

Molecular Weight (calculated)

92312.3 Da

IEP (calculated)

6.768

GRAVY (calculated)

-0.583

Length

841 amino acids

Sequence
(BLAST)

001: MAAAATAAAS PVEGLTGGGG GGGGGVDGLF VELWRACAGP LVTVPAVGER VFYLPQGHIE QVEASTNQVA EQQGAPLYNL PWKIPCKVMN VELKAEPDTD
101: EVYAQLTLLP EKQQDGNGSG NGNVSKDKVE EEEVVPPAAT ERPRVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS QHPPTQELVA KDLHGVEWRF
201: RHIFRGQPRR HLLQSGWSVF VSAKRLVAGD AFIFLRGENG ELRVGVRRAM RQQANIPSSV ISSHSMHLGV LATAWHAVNT GTMFTVYYKP RTSPSEFVVP
301: RDLYKESLKR NHSIGMRFKM TFEGEEAAEQ RFTGTIVGVG DSDPSGWADS KWRSLKVRWD EAASVPRPDR VSPWQIEPAN SPSPVNPLPA PRTKRARPNV
401: LASSPDLSAV NKEVASKVMA NSQQNGLPRA FHSQENMNLR SRFGDSNELN TSQKLTMWSS GSNQEKNNVS VQRELGSQSW MQMRRPDGSS EILSGFQPLK
501: DTRNPLSSFP SQISGNRSNT WNTINVHYPD QNANHNMYPG TWSLMPPNTG FGVNQQNYLM TPDITLPQRS LNAKFGGNGA FTSLRAHGID QRSSGWLGHI
601: EPSSHIDDAS SSLIKPQPLV IDHNVQKAKG SSCMLFGISL DSPAKPELLI SPPSVAFDGK LQQDALEEDE CSDPSKTVKP LDGAQHDSAR EKHQSCPDGT
701: KNIQSKQQNG SSRSCKKVHK QGIALGRSID LTKFTCYDEL IAELDQMFDF NGELNSSSKN WMVVYTDNEG DMMLVGDDPW NEFCNMVHKI FIYTREEVQK
801: MNPGALNSRS EDSRSTSVER GLVGEGLQGG LSTPSLNSEN C

Best Arabidopsis Sequence Match ( AT5G62000.2 )
(BLAST)

001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS

Arabidopsis Description

ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.