Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 78.88 | 78.88 |
| Os11t0523800-01 | Rice | nucleus | 33.86 | 76.23 |
| GSMUA_AchrUn_... | Banana | nucleus | 80.22 | 74.77 |
| GSMUA_Achr6P16450_001 | Banana | nucleus | 77.31 | 72.97 |
| VIT_17s0000g00320.t01 | Wine grape | nucleus | 66.26 | 63.34 |
| KRH41062 | Soybean | nucleus | 62.62 | 60.63 |
| OQU83539 | Sorghum | nucleus | 59.83 | 60.49 |
| KRH54110 | Soybean | nucleus | 61.65 | 60.26 |
| KRH59742 | Soybean | nucleus | 62.5 | 60.02 |
| VIT_01s0244g00150.t01 | Wine grape | nucleus | 55.83 | 59.82 |
| Os12t0479400-02 | Rice | nucleus | 61.04 | 59.81 |
| KRH63855 | Soybean | nucleus | 60.8 | 59.43 |
| PGSC0003DMT400037454 | Potato | nucleus | 58.98 | 58.62 |
| Solyc12g042070.1.1 | Tomato | nucleus | 58.86 | 58.57 |
| PGSC0003DMT400036765 | Potato | nucleus | 59.71 | 58.22 |
| Solyc03g118290.2.1 | Tomato | nucleus | 59.22 | 57.68 |
| AT5G62000.1 | Thale cress | nucleus | 59.47 | 57.04 |
| CDX86939 | Canola | nucleus | 58.13 | 56.35 |
| CDX87230 | Canola | nucleus | 56.55 | 56.28 |
| GSMUA_Achr9P08310_001 | Banana | vacuole | 33.25 | 56.26 |
| CDY67247 | Canola | nucleus | 58.01 | 56.17 |
| CDY00245 | Canola | nucleus | 57.89 | 56.05 |
| Bra010048.1-P | Field mustard | nucleus | 57.89 | 56.05 |
| Zm00001d049295_P001 | Maize | nucleus | 59.22 | 55.71 |
| EES17013 | Sorghum | nucleus | 56.67 | 55.66 |
| Zm00001d023659_P007 | Maize | nucleus | 54.98 | 54.84 |
| CDY16798 | Canola | nucleus | 57.4 | 53.93 |
| Zm00001d041056_P019 | Maize | nucleus | 54.73 | 53.44 |
| Bra035910.1-P | Field mustard | nucleus | 57.4 | 53.27 |
| GSMUA_Achr10P... | Banana | nucleus | 42.48 | 51.93 |
| GSMUA_Achr8P13630_001 | Banana | cytosol, nucleus, plastid | 18.81 | 51.84 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.56 | 51.34 |
| GSMUA_Achr6P07390_001 | Banana | nucleus | 39.81 | 50.08 |
| GSMUA_Achr6P12780_001 | Banana | nucleus | 42.23 | 50.0 |
| GSMUA_Achr7P24330_001 | Banana | nucleus | 39.81 | 49.25 |
| GSMUA_Achr2P19760_001 | Banana | nucleus | 39.68 | 48.95 |
| GSMUA_Achr10P... | Banana | nucleus | 39.56 | 48.88 |
| GSMUA_Achr6P29070_001 | Banana | nucleus, vacuole | 40.41 | 47.78 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 22.21 | 35.81 |
| GSMUA_Achr5P26580_001 | Banana | nucleus | 32.52 | 33.21 |
| GSMUA_Achr5P02450_001 | Banana | nucleus | 32.52 | 32.37 |
| GSMUA_Achr3P23290_001 | Banana | nucleus | 32.16 | 32.32 |
| GSMUA_Achr1P08230_001 | Banana | mitochondrion | 25.61 | 31.78 |
| GSMUA_Achr1P20040_001 | Banana | nucleus | 29.98 | 31.59 |
| GSMUA_Achr4P25960_001 | Banana | nucleus | 30.7 | 31.59 |
| GSMUA_Achr11P... | Banana | nucleus | 31.31 | 31.12 |
| GSMUA_Achr6P19850_001 | Banana | nucleus | 32.16 | 30.99 |
| GSMUA_Achr3P10240_001 | Banana | nucleus | 23.3 | 30.97 |
| GSMUA_Achr11P... | Banana | nucleus | 30.34 | 30.86 |
| GSMUA_Achr11P... | Banana | nucleus | 33.37 | 30.12 |
| GSMUA_Achr5P00590_001 | Banana | nucleus | 32.89 | 29.81 |
| GSMUA_Achr9P14090_001 | Banana | nucleus | 32.16 | 29.12 |
| GSMUA_Achr6P36980_001 | Banana | nucleus | 29.49 | 28.32 |
| GSMUA_Achr9P18170_001 | Banana | nucleus | 29.25 | 28.22 |
| GSMUA_Achr3P05460_001 | Banana | nucleus | 32.65 | 27.65 |
| GSMUA_Achr6P01740_001 | Banana | nucleus | 33.25 | 26.37 |
| GSMUA_Achr8P23850_001 | Banana | nucleus | 33.01 | 25.49 |
| GSMUA_Achr1P20000_001 | Banana | nucleus | 29.37 | 24.92 |
| GSMUA_Achr5P05010_001 | Banana | nucleus | 25.24 | 23.88 |
| GSMUA_Achr1P20010_001 | Banana | plasma membrane, plastid | 28.03 | 22.0 |
| GSMUA_Achr8P13620_001 | Banana | nucleus | 12.86 | 21.9 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:Auxin_resp |
| InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr6G08090_001 |
| EnsemblPlants:GSMUA_Achr6P08090_001 | EnsemblPlants:GSMUA_Achr6T08090_001 | InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | UniProt:M0T558 |
| InterPro:PB1_dom | PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 |
| PANTHER:PTHR31384 | PANTHER:PTHR31384:SF40 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 | UniParc:UPI000296549E |
| SEG:seg | : | : | : | : | : |
Description
Auxin response factor 24 [Source:GMGC_GENE;Acc:GSMUA_Achr6G08090_001]
Coordinates
chr6:-:5407246..5412659
Molecular Weight (calculated)
91349.9 Da
IEP (calculated)
6.741
GRAVY (calculated)
-0.535
Length
824 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSEVSVKG SSQGRGDTVS SGCSELHDGA PVRGSDTEGS LGLSGGAVGG KDSVDALYTE LWHACAGPLV TIPRVGERVF YFPQGHMEQV EASTNQVADQ
101: QMPVYNLPWK ILCRVMNVHL KAEPDTDEVF AQITLLPDSK QDENTVEKDT LQPPPPRPHV YSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMSQQPPS
201: QELVAKDLHG VEWRFRHIFR GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RGDNGELRVG VRRAMRQQTN VPSSVISSHS MHLGVLATAW HAVNTGTMFT
301: VYYKPRTCPT EFIVPFDQYV DSIKNNHSIG MRFKMRFEGE EAPEQRFTGT IVGIGDSEPS RWPGSKWRCL KVRWDEASSI PRPDRVSPWK IEPAQLPLPP
401: NPIPMPRPKR PRTTAFPSSP DSSVLTKEAS SKVSMDPSQS HGVPRVLQGQ DMATLRSTFS NEADTAQKPI MWLTHDEEKN DVSAQRRLGS ESWMHIKRQE
501: PMYTDMLSGF QPSGDSSGFH SPFLEQASGD KFFLKPHFRD QEAKHNCSPG LWSLMPSNSN LNLGECNLKM TAHVGELSFQ KSSDWLGCSL PDSQTDNMPQ
601: HRVITLQPLV PSQNDVAKYK ANNSGCKLFG FHLNSKPVAS ESAAKHSESC IAAKLVSATL TNGDTEKLIQ VCPQASKDVQ NKMQGGSTRS CTKVHKQGIA
701: LGRSVDLTKF NGYDELIAEL DQMFEFEGAL IAPNKIWLVV YTDNEGDMML VGDDPWNEFC NMVRKIYIYT REEVQRMNPG TLNSRVEESP AVSEERISGK
801: ETKRPVPTAN SENSEGCPGV DAAF
101: QMPVYNLPWK ILCRVMNVHL KAEPDTDEVF AQITLLPDSK QDENTVEKDT LQPPPPRPHV YSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMSQQPPS
201: QELVAKDLHG VEWRFRHIFR GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RGDNGELRVG VRRAMRQQTN VPSSVISSHS MHLGVLATAW HAVNTGTMFT
301: VYYKPRTCPT EFIVPFDQYV DSIKNNHSIG MRFKMRFEGE EAPEQRFTGT IVGIGDSEPS RWPGSKWRCL KVRWDEASSI PRPDRVSPWK IEPAQLPLPP
401: NPIPMPRPKR PRTTAFPSSP DSSVLTKEAS SKVSMDPSQS HGVPRVLQGQ DMATLRSTFS NEADTAQKPI MWLTHDEEKN DVSAQRRLGS ESWMHIKRQE
501: PMYTDMLSGF QPSGDSSGFH SPFLEQASGD KFFLKPHFRD QEAKHNCSPG LWSLMPSNSN LNLGECNLKM TAHVGELSFQ KSSDWLGCSL PDSQTDNMPQ
601: HRVITLQPLV PSQNDVAKYK ANNSGCKLFG FHLNSKPVAS ESAAKHSESC IAAKLVSATL TNGDTEKLIQ VCPQASKDVQ NKMQGGSTRS CTKVHKQGIA
701: LGRSVDLTKF NGYDELIAEL DQMFEFEGAL IAPNKIWLVV YTDNEGDMML VGDDPWNEFC NMVRKIYIYT REEVQRMNPG TLNSRVEESP AVSEERISGK
801: ETKRPVPTAN SENSEGCPGV DAAF
001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS
Arabidopsis Description
ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.