Factsheet for GSMUA_Achr4P25960_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P12630_001
GSMUA_Achr4P05200_001
GSMUA_Achr4P21020_001
GSMUA_Achr4P21030_001
GSMUA_Achr4P22520_001
GSMUA_Achr4P22530_001
GSMUA_Achr5P03110_001
GSMUA_Achr8P20610_001
GSMUA_Achr8P20620_001
GSMUA_Achr8P29850_001
GSMUA_Achr9P10690_001
GSMUA_Achr9P10700_001
GSMUA_Achr9P16800_001
GSMUA_Achr9P24330_001
GSMUA_Achr9P25550_001
GSMUA_Achr9P26900_001
GSMUA_Achr9P26910_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37020.1	GSMUA_Achr10P...	AT1G04250.1	21734647
AT5G37020.1	GSMUA_Achr4P21020_001	AT1G04250.1	21734647
AT5G37020.1	GSMUA_Achr4P22520_001	AT1G04250.1	21734647
AT5G37020.1	GSMUA_Achr8P20610_001	AT1G04250.1	21734647
AT5G37020.1	GSMUA_Achr9P10700_001	AT1G04250.1	21734647
AT5G37020.1	GSMUA_Achr9P25550_001	AT1G04250.1	21734647
AT5G37020.1	GSMUA_Achr10P...	AT3G23050.1	21734647
AT5G37020.1	GSMUA_Achr4P21020_001	AT3G23050.1	21734647
AT5G37020.1	GSMUA_Achr4P22520_001	AT3G23050.1	21734647
AT5G37020.1	GSMUA_Achr8P20610_001	AT3G23050.1	21734647
AT5G37020.1	GSMUA_Achr9P10700_001	AT3G23050.1	21734647
AT5G37020.1	GSMUA_Achr9P25550_001	AT3G23050.1	21734647
AT5G37020.1	GSMUA_Achr8P29850_001	AT3G62100.1	21734647
AT5G37020.1	GSMUA_Achr9P16800_001	AT3G62100.1	21734647
AT5G37020.1	GSMUA_Achr11P...	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr2P12630_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr4P05200_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr4P21030_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr4P22530_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr5P03110_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr8P20620_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr9P10690_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr9P24330_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr11P...	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr2P12630_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr4P05200_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr4P21030_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr4P22530_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr5P03110_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr8P20620_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr9P10690_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr9P24330_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr9P26900_001	AT4G32280.1	21734647
AT5G37020.1	GSMUA_Achr9P26910_001	AT4G32280.1	21734647
AT5G37020.1	GSMUA_Achr11P...	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr2P12630_001	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr4P05200_001	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr4P21030_001	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr4P22530_001	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr5P03110_001	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr8P20620_001	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr9P10690_001	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr9P24330_001	AT5G43700.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P13630_001	Banana	cytosol, nucleus, plastid	31.59	84.62
GSMUA_Achr11P...	Banana	nucleus	73.28	72.47
GSMUA_AchrUn_...	Banana	mitochondrion	41.2	64.58
KRH30740	Soybean	nucleus	68.04	64.57
KRG98044	Soybean	nucleus	67.79	64.57
KRH17251	Soybean	nucleus	67.79	64.41
KRH72896	Soybean	nucleus	67.42	63.75
Os04t0671900-01	Rice	nucleus	64.79	63.45
KXG27404	Sorghum	nucleus	64.54	63.13
Zm00001d001879_P036	Maize	nucleus	64.29	63.04
Solyc02g037530.2.1	Tomato	nucleus	65.67	62.47
AT5G37020.1	Thale cress	nucleus	62.92	62.15
TraesCS2A01G547800.1	Wheat	nucleus	63.67	61.37
TraesCS2B01G578500.1	Wheat	nucleus	63.67	61.22
TraesCS2D01G548900.1	Wheat	nucleus	63.67	61.22
HORVU2Hr1G121110.32	Barley	nucleus	63.92	61.1
CDY39274	Canola	nucleus	59.18	60.85
CDY07460	Canola	nucleus	59.18	60.69
Solyc03g031970.2.1	Tomato	nucleus	63.92	60.66
Bra004125.1-P	Field mustard	nucleus	59.05	60.64
CDY53537	Canola	nucleus	60.92	59.95
CDX74594	Canola	nucleus	60.92	59.58
PGSC0003DMT400048034	Potato	nucleus	54.93	58.51
Bra028110.1-P	Field mustard	nucleus	61.17	58.06
Zm00001d026590_P003	Maize	nucleus	61.3	57.9
GSMUA_Achr3P23290_001	Banana	nucleus	57.68	56.34
GSMUA_Achr5P02450_001	Banana	nucleus	58.05	56.16
GSMUA_Achr5P26580_001	Banana	nucleus	56.18	55.76
VIT_04s0079g00200.t01	Wine grape	nucleus	48.44	54.88
GSMUA_Achr11P...	Banana	nucleus	56.05	54.16
GSMUA_Achr6P19850_001	Banana	nucleus	57.68	54.04
GSMUA_Achr5P00590_001	Banana	nucleus	58.68	51.71
GSMUA_Achr11P...	Banana	nucleus	58.93	51.7
GSMUA_Achr3P10240_001	Banana	nucleus	34.33	44.35
GSMUA_Achr1P08230_001	Banana	mitochondrion	36.08	43.52
GSMUA_Achr8P13620_001	Banana	nucleus	25.34	41.94
GSMUA_Achr1P20040_001	Banana	nucleus	40.45	41.43
GSMUA_Achr9P18170_001	Banana	nucleus	43.07	40.4
GSMUA_Achr9P08310_001	Banana	vacuole	23.85	39.22
GSMUA_Achr9P14090_001	Banana	nucleus	43.95	38.68
GSMUA_Achr6P36980_001	Banana	nucleus	39.7	37.06
GSMUA_Achr3P05460_001	Banana	nucleus	44.94	37.0
GSMUA_AchrUn_...	Banana	nucleus	27.84	35.12
GSMUA_Achr6P07390_001	Banana	nucleus	28.21	34.5
GSMUA_Achr2P19760_001	Banana	nucleus	28.71	34.43
GSMUA_Achr10P...	Banana	nucleus	28.84	34.27
GSMUA_Achr5P05010_001	Banana	nucleus	37.08	34.1
GSMUA_Achr10P...	Banana	nucleus	28.21	33.88
GSMUA_Achr6P01740_001	Banana	nucleus	43.57	33.59
GSMUA_Achr8P23850_001	Banana	nucleus	44.44	33.36
GSMUA_Achr7P24330_001	Banana	nucleus	27.72	33.33
GSMUA_Achr6P12780_001	Banana	nucleus	28.84	33.19
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	28.84	33.14
GSMUA_Achr1P20000_001	Banana	nucleus	37.95	31.31
GSMUA_Achr10P...	Banana	nucleus	31.71	30.83
GSMUA_Achr6P08090_001	Banana	nucleus	31.59	30.7
GSMUA_Achr6P16450_001	Banana	nucleus	31.84	29.21
GSMUA_AchrUn_...	Banana	nucleus	30.96	28.05
GSMUA_Achr1P20010_001	Banana	plasma membrane, plastid	35.83	27.33

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:Auxin_resp	InterPro:B3_DNA-bd
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G25960_001	EnsemblPlants:GSMUA_Achr4P25960_001
EnsemblPlants:GSMUA_Achr4T25960_001	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	UniProt:M0SS57	InterPro:PB1_dom
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF2
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI0002949ABA	SEG:seg	:

Description

Auxin response factor 12 [Source:GMGC_GENE;Acc:GSMUA_Achr4G25960_001]

Coordinates

chr4:-:25260118..25270444

Molecular Weight (calculated)

90164.1 Da

IEP (calculated)

5.920

GRAVY (calculated)

-0.435

Length

801 amino acids

Sequence
(BLAST)

001: MKLSTVGISQ QAPEEEEKRC LDSELWHACA GPLVCLPTAG TRVVYFPQGH SEQVAASTNK EVEGHIPNYP SLLPQLLCQL HNVTLHADVE TDEVYAQMTL
101: QPLSPEEQKD AYFPMEMGIA SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDVEWKF RHIFRGQPKR HLLTTGWSVF
201: VSAKRLVAGD SVLFIWNEKN QLLLGIRHAN RPQTSTPSSV LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LSKYIKAVFH ARVSVGMRFR
301: MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRTVQVGW DESTAGERQR RVSLWEIEPL TTFPMYPSLF PIGLRRSWHP GASFPHDNRE EFNTFMWPRG
401: VPVDQGMYSL NLPSLGTGPW IQQRHETLLL GSEFDQYQAM CPLAFQDIRC GDILKQQFLQ NQQPIQFLQQ SCTSSSLFKP QDNQQQIVNP QPQCLTENHR
501: HPVPYQQLQP PHTEQQKQLP QEANVYTQAF TMHNNHVQRQ SALPSPLFEN STIPDSSLNF SSVPTPISDQ DILGSAYREG NVSGSNYSRL NQSMINHPGQ
601: KSWELNFTKS QMISFDGAAL LSSFPAKNST VGNDNFTDTQ TCTLFGFSKD SSSLLNSALS NSGTVNDVST MPYTSSCFQN SFYGYLDDSP SLLHGAGETD
701: LQSQTFVKVY KSGSVGRSLD ISRFSNYEEL REELGQMFGI EGLLEDPLRS GWQLVFVDRE NDVLLLGDDP WESFVNNVWY IKILSPEDVL KMGKQGVDSF
801: C

Best Arabidopsis Sequence Match ( AT5G37020.1 )
(BLAST)

001: MKLSTSGLGQ QGHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP
101: LTPEEQKETF VPIELGIPSK QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYTLQ PPAQELIARD LHDVEWKFRH IFRGQPKRHL LTTGWSVFVS
201: AKRLVAGDSV IFIRNEKNQL FLGIRHATRP QTIVPSSVLS SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML
301: FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWHAGT SSLPDGRGDL GSGLTWLRGG
401: GGEQQGLLPL NYPSVGLFPW MQQRLDLSQM GTDNNQQYQA MLAAGLQNIG GGDPLRQQFV QLQEPHHQYL QQSASHNSDL MLQQQQQQQA SRHLMHAQTQ
501: IMSENLPQQN MRQEVSNQPA GQQQQLQQPD QNAYLNAFKM QNGHLQQWQQ QSEMPSPSFM KSDFTDSSNK FATTASPASG DGNLLNFSIT GQSVLPEQLT
601: TEGWSPKASN TFSEPLSLPQ AYPGKSLALE PGNPQNPSLF GVDPDSGLFL PSTVPRFASS SGDAEASPMS LTDSGFQNSL YSCMQDTTHE LLHGAGQINS
701: SNQTKNFVKV YKSGSVGRSL DISRFSSYHE LREELGKMFA IEGLLEDPLR SGWQLVFVDK ENDILLLGDD PWESFVNNVW YIKILSPEDV HQMGDHGEGS
801: GGLFPQNPTH L

Arabidopsis Description

ARF8Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178UFA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.