Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P21020_001 | Banana | nucleus | 73.12 | 74.6 |
| GSMUA_Achr10P... | Banana | nucleus | 66.8 | 70.12 |
| GSMUA_Achr8P20610_001 | Banana | nucleus | 67.59 | 70.08 |
| GSMUA_Achr9P25550_001 | Banana | nucleus | 67.19 | 69.96 |
| VIT_14s0081g00010.t01 | Wine grape | nucleus, plastid | 46.64 | 69.41 |
| GSMUA_Achr9P10700_001 | Banana | nucleus | 62.45 | 65.56 |
| TraesCS5A01G058600.1 | Wheat | nucleus | 64.82 | 64.82 |
| TraesCS5D01G069300.1 | Wheat | nucleus | 64.43 | 64.68 |
| TraesCS5B01G058500.1 | Wheat | nucleus | 64.43 | 64.68 |
| EES17334 | Sorghum | cytosol | 68.38 | 61.57 |
| CDY10694 | Canola | mitochondrion | 42.29 | 61.49 |
| PGSC0003DMT400041976 | Potato | nucleus | 51.38 | 61.03 |
| KRG92683 | Soybean | nucleus | 54.55 | 60.79 |
| Solyc06g053830.2.1 | Tomato | nucleus | 52.17 | 60.55 |
| Os12t0601300-01 | Rice | nucleus | 66.01 | 60.29 |
| Solyc09g083290.2.1 | Tomato | nucleus | 56.13 | 60.17 |
| Solyc06g008590.2.1 | Tomato | nucleus | 49.41 | 60.1 |
| Os03t0633500-01 | Rice | cytosol | 55.34 | 60.09 |
| VIT_05s0020g04690.t01 | Wine grape | cytosol, nucleus, plastid | 57.71 | 60.08 |
| HORVU5Hr1G014300.4 | Barley | nucleus | 64.82 | 59.42 |
| KRH68738 | Soybean | nucleus | 56.92 | 59.26 |
| PGSC0003DMT400015610 | Potato | nucleus | 55.73 | 59.24 |
| KRG96977 | Soybean | nucleus | 53.75 | 59.13 |
| PGSC0003DMT400013627 | Potato | nucleus | 49.41 | 58.41 |
| VIT_07s0141g00290.t01 | Wine grape | cytosol, nucleus, plastid | 54.94 | 58.4 |
| TraesCS5B01G381900.1 | Wheat | cytosol, mitochondrion, nucleus | 58.1 | 58.1 |
| KRH34377 | Soybean | nucleus | 54.55 | 57.74 |
| OQU91311 | Sorghum | cytosol, mitochondrion, nucleus | 60.08 | 57.58 |
| KRH67289 | Soybean | nucleus | 57.31 | 57.09 |
| KRG95616 | Soybean | nucleus | 56.52 | 56.75 |
| AT3G23050.1 | Thale cress | cytosol, nucleus, plastid | 53.75 | 55.97 |
| PGSC0003DMT400050101 | Potato | cytosol, nucleus, plastid | 54.94 | 55.82 |
| Bra001900.1-P | Field mustard | cytosol, nucleus, plastid | 52.17 | 55.7 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 52.17 | 55.7 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 50.59 | 55.41 |
| Solyc01g097290.2.1 | Tomato | nucleus | 54.94 | 55.38 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 50.99 | 55.36 |
| CDY47148 | Canola | nucleus | 50.99 | 55.36 |
| CDY18214 | Canola | nucleus | 49.01 | 55.36 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 49.8 | 55.26 |
| KRH32099 | Soybean | nucleus | 54.15 | 55.24 |
| AT1G04250.1 | Thale cress | cytosol, nucleus, plastid | 49.8 | 55.02 |
| Bra030560.1-P | Field mustard | nucleus | 49.8 | 55.02 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 49.8 | 55.02 |
| Bra040398.1-P | Field mustard | nucleus | 50.2 | 54.98 |
| Bra033886.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 52.57 | 54.96 |
| Bra039855.1-P | Field mustard | nucleus | 50.59 | 54.94 |
| CDX89832 | Canola | nucleus | 48.62 | 54.91 |
| CDY32537 | Canola | nucleus | 49.41 | 54.82 |
| Bra032520.1-P | Field mustard | nucleus | 49.01 | 54.63 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 51.78 | 54.58 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 51.78 | 54.58 |
| Bra015298.1-P | Field mustard | nucleus | 48.22 | 54.46 |
| AT3G04730.1 | Thale cress | cytosol, nucleus, plastid | 50.59 | 54.24 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 50.59 | 54.24 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 51.78 | 53.25 |
| AT4G14550.2 | Thale cress | nucleus | 49.01 | 52.99 |
| Bra040122.1-P | Field mustard | nucleus | 47.04 | 52.89 |
| GSMUA_Achr4P05200_001 | Banana | mitochondrion | 26.09 | 52.8 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 49.41 | 52.74 |
| GSMUA_Achr9P10690_001 | Banana | cytosol, mitochondrion, nucleus | 27.67 | 51.47 |
| HORVU5Hr1G093580.2 | Barley | cytosol, nucleus, peroxisome | 56.13 | 50.53 |
| GSMUA_Achr5P03110_001 | Banana | nucleus | 32.81 | 49.4 |
| KRH34091 | Soybean | cytosol, nucleus, plastid | 44.27 | 48.48 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.5 | 47.95 |
| GSMUA_Achr9P02960_001 | Banana | nucleus | 39.13 | 47.83 |
| Zm00001d041416_P001 | Maize | nucleus | 64.82 | 47.67 |
| KRH71337 | Soybean | nucleus | 32.02 | 47.65 |
| GSMUA_Achr4P22530_001 | Banana | nucleus | 33.99 | 47.51 |
| GSMUA_Achr2P15340_001 | Banana | nucleus | 45.85 | 47.35 |
| GSMUA_Achr9P24330_001 | Banana | nucleus | 31.62 | 46.78 |
| GSMUA_Achr4P21030_001 | Banana | nucleus | 35.57 | 45.45 |
| TraesCS5D01G388300.2 | Wheat | cytosol | 56.13 | 45.08 |
| GSMUA_Achr11P... | Banana | nucleus | 30.83 | 44.83 |
| CDY50750 | Canola | nucleus, plastid | 50.99 | 44.33 |
| GSMUA_Achr8P20620_001 | Banana | nucleus | 32.81 | 44.15 |
| TraesCS5A01G378300.2 | Wheat | cytosol, mitochondrion, nucleus | 52.17 | 43.28 |
| KRG92429 | Soybean | cytosol, nucleus, plastid | 56.52 | 43.2 |
| GSMUA_Achr10P... | Banana | nucleus | 47.04 | 42.81 |
| GSMUA_Achr2P09210_001 | Banana | nucleus | 41.9 | 42.74 |
| GSMUA_Achr9P06290_001 | Banana | nucleus | 45.85 | 42.34 |
| GSMUA_Achr10P... | Banana | nucleus | 46.25 | 42.09 |
| GSMUA_Achr7P10930_001 | Banana | nucleus | 43.48 | 41.2 |
| GSMUA_Achr2P12630_001 | Banana | nucleus | 32.81 | 40.89 |
| GSMUA_Achr10P... | Banana | nucleus | 46.64 | 40.41 |
| GSMUA_Achr6P26730_001 | Banana | nucleus | 43.48 | 39.43 |
| GSMUA_Achr3P03400_001 | Banana | nucleus | 47.04 | 38.14 |
| GSMUA_Achr4P08960_001 | Banana | nucleus | 40.71 | 37.87 |
| CDY63072 | Canola | nucleus | 49.8 | 31.66 |
| GSMUA_Achr7P13250_001 | Banana | nucleus | 37.15 | 31.65 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr4G22520_001 | EnsemblPlants:GSMUA_Achr4P22520_001 |
| EnsemblPlants:GSMUA_Achr4T22520_001 | InterPro:IPR000270 | UniProt:M0SR65 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF28 | SUPFAM:SSF54277 | UniParc:UPI0002956ED2 | SEG:seg | : |
Description
Auxin-responsive protein IAA30 [Source:GMGC_GENE;Acc:GSMUA_Achr4G22520_001]
Coordinates
chr4:-:22802852..22804622
Molecular Weight (calculated)
27140.4 Da
IEP (calculated)
9.114
GRAVY (calculated)
-0.506
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MATGSLAGEK DERSLGFQET ELRLGLPGGG SGGEGDVGKN SGKRAFAETI DLKLKLQAAG DTKDMAAALK MKRSPSQMSI AASATDPEKP PAPKAQVVGW
101: PPVRSHRRSM LAVQSEKPSK EDGERPAGSL AAFVKVSVDG APYLRKVDLK MYRSYQELSM ALQKMFSSFT SVSSSCGSRG TNGGDSMNEG KLVDLITGSE
201: FVSTYEDKDG DWMLVGDVPW EMFVESCKRL RLMKGSEAVG LAPRGMEKCK NRS
101: PPVRSHRRSM LAVQSEKPSK EDGERPAGSL AAFVKVSVDG APYLRKVDLK MYRSYQELSM ALQKMFSSFT SVSSSCGSRG TNGGDSMNEG KLVDLITGSE
201: FVSTYEDKDG DWMLVGDVPW EMFVESCKRL RLMKGSEAVG LAPRGMEKCK NRS
001: MMGSVELNLR ETELCLGLPG GDTVAPVTGN KRGFSETVDL KLNLNNEPAN KEGSTTHDVV TFDSKEKSAC PKDPAKPPAK AQVVGWPPVR SYRKNVMVSC
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
Arabidopsis Description
IAA17Auxin-responsive protein IAA17 [Source:UniProtKB/Swiss-Prot;Acc:P93830]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.