Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032520.1-P | Field mustard | nucleus | 96.93 | 97.36 |
| CDY32537 | Canola | nucleus | 96.93 | 96.93 |
| AT1G04250.1 | Thale cress | cytosol, nucleus, plastid | 88.6 | 88.21 |
| CDX89832 | Canola | nucleus | 85.09 | 86.61 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 86.84 | 86.46 |
| CDY18214 | Canola | nucleus | 84.21 | 85.71 |
| KRH34377 | Soybean | nucleus | 69.3 | 66.11 |
| CDY10694 | Canola | mitochondrion | 50.0 | 65.52 |
| CDY47148 | Canola | nucleus | 66.67 | 65.24 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 67.54 | 64.98 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 66.23 | 64.81 |
| VIT_05s0020g04690.t01 | Wine grape | cytosol, nucleus, plastid | 68.42 | 64.2 |
| Solyc09g083290.2.1 | Tomato | nucleus | 64.91 | 62.71 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 65.79 | 62.5 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 65.79 | 62.5 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 66.67 | 61.79 |
| PGSC0003DMT400015610 | Potato | nucleus | 64.47 | 61.76 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 60.09 | 59.31 |
| GSMUA_Achr10P... | Banana | nucleus | 61.84 | 58.51 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 60.53 | 58.47 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 59.65 | 57.38 |
| GSMUA_Achr8P20610_001 | Banana | nucleus | 60.09 | 56.15 |
| GSMUA_Achr9P25550_001 | Banana | nucleus | 59.65 | 55.97 |
| GSMUA_Achr4P21020_001 | Banana | nucleus | 60.53 | 55.65 |
| CDX92972 | Canola | nucleus | 41.23 | 54.97 |
| CDX94876 | Canola | nucleus | 41.23 | 54.97 |
| CDY10692 | Canola | nucleus | 41.23 | 54.65 |
| CDY35493 | Canola | nucleus | 40.79 | 54.39 |
| CDY40837 | Canola | nucleus | 40.79 | 54.39 |
| CDY10346 | Canola | nucleus | 40.79 | 54.07 |
| GSMUA_Achr9P10700_001 | Banana | nucleus | 57.02 | 53.94 |
| TraesCS5D01G069300.1 | Wheat | nucleus | 58.33 | 52.78 |
| TraesCS5A01G058600.1 | Wheat | nucleus | 58.33 | 52.57 |
| TraesCS5B01G058500.1 | Wheat | nucleus | 57.89 | 52.38 |
| CDY36883 | Canola | nucleus | 39.04 | 51.74 |
| EER90896 | Sorghum | nucleus | 53.07 | 51.49 |
| Zm00001d033976_P002 | Maize | nucleus | 53.51 | 51.48 |
| Os03t0742900-01 | Rice | vacuole | 53.07 | 51.27 |
| CDY53735 | Canola | nucleus | 38.6 | 51.16 |
| Os03t0633500-01 | Rice | cytosol | 52.19 | 51.07 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 40.79 | 50.0 |
| TraesCS5D01G392000.1 | Wheat | nucleus | 50.88 | 50.0 |
| GSMUA_Achr4P22520_001 | Banana | nucleus | 55.26 | 49.8 |
| TraesCS5A01G382600.1 | Wheat | nucleus | 50.88 | 49.79 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 41.67 | 49.74 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 41.67 | 49.74 |
| TraesCS5B01G386800.1 | Wheat | nucleus | 50.88 | 49.57 |
| Zm00001d013302_P002 | Maize | nucleus | 49.56 | 49.56 |
| CDY63072 | Canola | nucleus | 86.4 | 49.5 |
| HORVU5Hr1G094220.1 | Barley | nucleus | 50.88 | 48.95 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 38.6 | 48.89 |
| CDY40881 | Canola | cytosol | 39.04 | 48.63 |
| CDY53305 | Canola | cytosol | 33.33 | 48.41 |
| EES17334 | Sorghum | cytosol | 59.65 | 48.4 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 39.47 | 48.39 |
| KRG92429 | Soybean | cytosol, nucleus, plastid | 70.18 | 48.34 |
| HORVU5Hr1G014300.4 | Barley | nucleus | 57.89 | 47.83 |
| CDY50750 | Canola | nucleus, plastid | 60.96 | 47.77 |
| Os12t0601300-01 | Rice | nucleus | 57.89 | 47.65 |
| TraesCS5B01G381900.1 | Wheat | cytosol, mitochondrion, nucleus | 52.63 | 47.43 |
| CDY10069 | Canola | nucleus | 38.16 | 47.28 |
| OQU91311 | Sorghum | cytosol, mitochondrion, nucleus | 54.39 | 46.97 |
| CDX82428 | Canola | cytosol, nucleus, plastid | 39.91 | 46.91 |
| CDX75834 | Canola | cytosol, nucleus, plastid | 39.04 | 45.88 |
| CDY50113 | Canola | cytosol, nucleus, plastid | 35.96 | 45.3 |
| CDY06836 | Canola | nucleus | 47.81 | 43.25 |
| CDY20135 | Canola | cytosol, nucleus, plastid | 37.28 | 43.15 |
| CDY21845 | Canola | cytosol, extracellular, nucleus | 37.28 | 43.15 |
| CDY68807 | Canola | nucleus | 36.84 | 42.86 |
| CDY26042 | Canola | nucleus | 36.4 | 42.35 |
| CDY71748 | Canola | cytosol, nucleus, plastid | 31.14 | 41.04 |
| HORVU5Hr1G093580.2 | Barley | cytosol, nucleus, peroxisome | 50.44 | 40.93 |
| CDY53800 | Canola | nucleus | 32.46 | 39.36 |
| CDY25617 | Canola | nucleus | 45.18 | 38.72 |
| CDX89499 | Canola | nucleus | 44.3 | 37.27 |
| Zm00001d041416_P001 | Maize | nucleus | 56.14 | 37.21 |
| CDY37837 | Canola | mitochondrion | 48.25 | 37.16 |
| CDY68170 | Canola | nucleus, plastid | 50.44 | 36.98 |
| TraesCS5D01G388300.2 | Wheat | cytosol | 50.44 | 36.51 |
| TraesCS5A01G378300.2 | Wheat | cytosol, mitochondrion, nucleus | 48.68 | 36.39 |
| CDY18679 | Canola | plastid | 49.12 | 35.9 |
| CDY45607 | Canola | cytosol, nucleus, plastid | 48.68 | 33.74 |
| CDY08767 | Canola | cytosol, nucleus, plastid | 49.12 | 33.73 |
| CDY66936 | Canola | cytosol, nucleus, plastid | 39.47 | 32.61 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078FDF7 | UniProt:A0A078FDF7 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY10068 | ProteinID:CDY10068 | ProteinID:CDY10068.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00031865001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF28 | SUPFAM:SSF54277 | UniParc:UPI0004EDBC0F |
| SEG:seg | : | : | : | : | : |
Description
BnaC08g43830DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDF7]
Coordinates
chrLK032000:-:785576..787896
Molecular Weight (calculated)
25114.1 Da
IEP (calculated)
7.187
GRAVY (calculated)
-0.515
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MMGTVELNLR DTELCLGLPG GETGAPVTGT KRGFSETVDL KLNLNNEPEI NEGSKPHDVV TSVSKEKSSS PKDPAKPPAK AQVVGWPPVR SYRKNVMGSY
101: QKPSGGTETA AFVKVSMDGA PYLRKVDLKM YKSYDELSNA LSNMFSSFTM GKYGGEEGMI DFMNERNMAL VTTWDYVPSY EDKDGDWMLV GDVPWPMFVD
201: TCKRLRLMKG SDAIGLAPRA MEKCKSRA
101: QKPSGGTETA AFVKVSMDGA PYLRKVDLKM YKSYDELSNA LSNMFSSFTM GKYGGEEGMI DFMNERNMAL VTTWDYVPSY EDKDGDWMLV GDVPWPMFVD
201: TCKRLRLMKG SDAIGLAPRA MEKCKSRA
001: MMGSVELNLR ETELCLGLPG GDTVAPVTGN KRGFSETVDL KLNLNNEPAN KEGSTTHDVV TFDSKEKSAC PKDPAKPPAK AQVVGWPPVR SYRKNVMVSC
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
Arabidopsis Description
IAA17Auxin-responsive protein IAA17 [Source:UniProtKB/Swiss-Prot;Acc:P93830]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.