Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014303.1-P | Field mustard | nucleus | 95.97 | 97.04 |
| CDY46538 | Canola | nucleus | 95.24 | 96.3 |
| CDX87863 | Canola | nucleus | 82.42 | 88.58 |
| CDY22876 | Canola | nucleus | 80.95 | 87.35 |
| CDY33844 | Canola | nucleus | 79.49 | 85.77 |
| AT1G51950.1 | Thale cress | nucleus | 80.59 | 82.4 |
| CDY34957 | Canola | nucleus | 63.37 | 64.31 |
| CDY43104 | Canola | nucleus | 62.64 | 64.04 |
| CDY64626 | Canola | cytosol | 62.27 | 63.2 |
| CDX75884 | Canola | cytosol | 60.81 | 61.25 |
| CDX82399 | Canola | nucleus | 60.44 | 60.66 |
| CDX92077 | Canola | nucleus | 61.54 | 58.95 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 31.87 | 50.0 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 31.87 | 50.0 |
| CDX87072 | Canola | cytosol | 31.5 | 49.14 |
| TraesCS1A01G122600.2 | Wheat | nucleus | 36.63 | 44.44 |
| TraesCS1D01G123500.1 | Wheat | nucleus | 36.63 | 44.05 |
| CDY19790 | Canola | cytosol | 30.77 | 43.08 |
| TraesCS3B01G127400.1 | Wheat | nucleus | 36.26 | 43.04 |
| Zm00001d010360_P001 | Maize | cytosol, nucleus | 35.9 | 42.98 |
| Solyc03g121060.2.1 | Tomato | nucleus | 44.69 | 42.51 |
| PGSC0003DMT400006709 | Potato | nucleus | 43.96 | 42.4 |
| Os01t0190300-01 | Rice | nucleus | 36.63 | 42.02 |
| KRH09948 | Soybean | nucleus | 49.08 | 41.88 |
| GSMUA_Achr3P16300_001 | Banana | endoplasmic reticulum, golgi, mitochondrion, plastid | 34.8 | 41.67 |
| EES17832 | Sorghum | nucleus | 36.63 | 41.32 |
| TraesCS3D01G110200.1 | Wheat | nucleus | 34.8 | 41.3 |
| Zm00001d039513_P001 | Maize | cytosol, nucleus, plastid | 34.43 | 41.05 |
| HORVU1Hr1G028170.4 | Barley | cytosol, nucleus, plastid | 36.26 | 40.08 |
| GSMUA_Achr5P09310_001 | Banana | endoplasmic reticulum | 34.43 | 40.0 |
| HORVU3Hr1G019750.4 | Barley | cytosol, nucleus, plastid | 35.9 | 40.0 |
| Zm00001d037691_P003 | Maize | cytosol, nucleus | 34.8 | 38.46 |
| Os02t0228900-01 | Rice | nucleus | 42.12 | 38.33 |
| KRH23388 | Soybean | nucleus | 48.35 | 38.15 |
| TraesCS3A01G108400.1 | Wheat | cytosol, nucleus, peroxisome | 35.16 | 38.1 |
| CDY59182 | Canola | nucleus | 30.77 | 37.33 |
| CDY51701 | Canola | nucleus | 27.47 | 37.31 |
| CDY53196 | Canola | nucleus | 30.77 | 37.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.03 | 36.36 |
| OQU84670 | Sorghum | nucleus | 38.83 | 36.3 |
| Zm00001d016277_P002 | Maize | nucleus | 39.56 | 36.12 |
| CDY46895 | Canola | cytosol | 9.52 | 36.11 |
| KRH47203 | Soybean | nucleus | 41.76 | 35.96 |
| KRH44271 | Soybean | nucleus | 40.66 | 35.46 |
| CDY19477 | Canola | nucleus | 30.4 | 35.32 |
| GSMUA_Achr7P13680_001 | Banana | nucleus | 47.25 | 35.15 |
| CDX89814 | Canola | nucleus | 30.04 | 34.89 |
| CDY17158 | Canola | nucleus | 30.04 | 34.75 |
| TraesCS1B01G356600.1 | Wheat | cytosol | 37.36 | 34.34 |
| CDX84693 | Canola | nucleus | 30.4 | 34.3 |
| TraesCS1D01G345400.1 | Wheat | nucleus | 37.0 | 34.24 |
| TraesCS1A01G343300.1 | Wheat | nucleus | 36.63 | 34.01 |
| Os05t0523300-01 | Rice | nucleus | 40.66 | 33.95 |
| CDX79522 | Canola | nucleus | 30.4 | 33.74 |
| CDY18243 | Canola | nucleus | 28.21 | 33.33 |
| CDY38374 | Canola | nucleus | 28.21 | 32.35 |
| TraesCS3D01G276600.1 | Wheat | cytosol, mitochondrion, nucleus | 39.19 | 31.94 |
| CDY71609 | Canola | nucleus, plastid | 18.32 | 31.85 |
| CDX95843 | Canola | plastid | 17.95 | 31.61 |
| VIT_09s0002g03410.t01 | Wine grape | nucleus | 50.55 | 31.44 |
| Os01t0741900-01 | Rice | nucleus | 38.46 | 31.34 |
| CDY35203 | Canola | nucleus | 27.84 | 31.28 |
| CDX82361 | Canola | cytosol, plastid | 17.95 | 31.21 |
| Zm00001d043515_P002 | Maize | cytosol, mitochondrion, nucleus | 40.66 | 31.09 |
| TraesCS3A01G276500.1 | Wheat | cytosol, mitochondrion, nucleus | 38.83 | 31.09 |
| CDX92140 | Canola | nucleus, plastid | 17.95 | 31.01 |
| TraesCS3B01G310500.1 | Wheat | cytosol, mitochondrion, nucleus | 38.83 | 30.9 |
| KXG33336 | Sorghum | nucleus | 40.29 | 30.14 |
| HORVU3Hr1G070620.5 | Barley | cytosol, mitochondrion, nucleus | 38.46 | 29.75 |
| OQU86163 | Sorghum | golgi, plastid | 37.73 | 28.77 |
| CDY25089 | Canola | plastid | 17.95 | 28.32 |
| Zm00001d038784_P001 | Maize | nucleus | 36.26 | 28.05 |
| KXG22376 | Sorghum | nucleus | 35.16 | 27.83 |
| CDX67874 | Canola | plastid | 17.58 | 27.75 |
| CDY58757 | Canola | plastid | 17.22 | 27.33 |
| CDY27511 | Canola | cytosol, plastid | 17.22 | 27.01 |
| CDY48005 | Canola | cytosol, plastid | 17.22 | 27.01 |
| CDY11402 | Canola | plastid | 17.22 | 26.55 |
| CDX89844 | Canola | cytosol, nucleus, plastid | 25.64 | 25.83 |
| CDY46058 | Canola | plastid | 15.38 | 25.15 |
| CDY18205 | Canola | cytosol, nucleus, plastid | 24.54 | 24.72 |
| CDX68829 | Canola | nucleus | 17.58 | 21.05 |
| CDX92888 | Canola | nucleus | 28.94 | 19.51 |
| CDX75231 | Canola | nucleus | 16.48 | 19.48 |
| CDY13478 | Canola | nucleus | 17.22 | 19.34 |
| CDX72351 | Canola | nucleus | 17.22 | 19.03 |
Protein Annotations
| MapMan:11.2.2.1.2 | Gene3D:3.10.20.90 | GO:A0A078IVI7 | UniProt:A0A078IVI7 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY53439 | ProteinID:CDY53439 | ProteinID:CDY53439.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00010696001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF2 | SUPFAM:SSF54277 | UniParc:UPI0004EE4E7B |
Description
BnaC03g78000DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078IVI7]
Coordinates
chrLK033203:+:33107..35110
Molecular Weight (calculated)
30277.9 Da
IEP (calculated)
9.469
GRAVY (calculated)
-0.736
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGSSRNGEI SPKLLHLIPQ GRRNWFHHEK ASVYNTEEKN LELKLGPPGE DEDEDGSSMI RRIKKEPKDK SILSLAGNHH FSPSITTNKP TSQKRNAPGP
101: VVGWPPVRSF RKNLANGSSS KLGNESTSNG VVIKNQKCDD DNGREKPVEP KRQGGLFVKI NMYGVPIGRK VDLSAHDSYE QLSLTVDKLF RGLLAAQRES
201: LSFGEEVKPI TGLLSGNGEY TLTYEDNEGD KMLVGDVPWH MFVSSVKRLR VIKTSEIFSA LTYANGKQEN MGS
101: VVGWPPVRSF RKNLANGSSS KLGNESTSNG VVIKNQKCDD DNGREKPVEP KRQGGLFVKI NMYGVPIGRK VDLSAHDSYE QLSLTVDKLF RGLLAAQRES
201: LSFGEEVKPI TGLLSGNGEY TLTYEDNEGD KMLVGDVPWH MFVSSVKRLR VIKTSEIFSA LTYANGKQEN MGS
001: MEGYSRNGEI SPKLLDLMIP QERRNWFHDE KNSVFKTEEK KLELKLGPPG EEDDDESMIR HMKKEPKDKS ILSLAGKYFS PSSTKTTSHK RTAPGPVVGW
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR
Arabidopsis Description
IAA18Auxin-responsive protein IAA18 [Source:UniProtKB/Swiss-Prot;Acc:O24408]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.