CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89437
CDX90850
CDX94540
CDY03145
CDY03368
CDY12039
CDY16684
CDY21291
CDY71809

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55220.1	CDY03145	AT1G34430.1	21798944
AT5G55220.1	CDY12039	AT1G34430.1	21798944
AT5G55220.1	CDX90850	AT4G04020.1	21798944
AT5G55220.1	CDX94540	AT4G04020.1	21798944
AT5G55220.1	CDY16684	AT4G04020.1	21798944
AT5G55220.1	CDY21291	AT4G04020.1	21798944
AT5G55220.1	CDY71809	AT4G04020.1	21798944
AT5G55220.1	CDX89437	AT4G25200.1	21798944
AT5G55220.1	CDY03368	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002923.1-P	Field mustard	cytosol, nucleus, plastid	29.29	67.21
KRH26213	Soybean	cytosol, extracellular, nucleus, plastid	18.57	22.41
CDY17312	Canola	endoplasmic reticulum	48.57	17.75
CDY20778	Canola	plastid	57.86	14.86
CDY06597	Canola	plastid	57.86	14.78
AT5G55220.1	Thale cress	plastid	55.71	14.26
Solyc07g064950.2.1	Tomato	nucleus, plastid	47.86	12.71
VIT_19s0090g01210.t01	Wine grape	plastid	48.57	12.69
PGSC0003DMT400057431	Potato	plastid	47.86	12.27
KRH73811	Soybean	plastid	44.29	11.44
KRH14319	Soybean	plastid	43.57	11.19
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	44.29	10.88
Zm00001d023292_P001	Maize	plastid	38.57	10.23
HORVU7Hr1G045680.1	Barley	plastid	37.86	10.08
TraesCS7A01G222800.1	Wheat	plastid	37.86	10.08
TraesCS7B01G129300.1	Wheat	plastid	37.86	10.08
TraesCS7D01G224400.1	Wheat	plastid	37.86	10.08
Os06t0308000-01	Rice	plastid	38.57	10.06
EES16569	Sorghum	plastid	35.71	9.52
Zm00001d000318_P001	Maize	peroxisome	7.86	3.87
Zm00001d047056_P001	Maize	plastid	7.86	3.27
CDY19904	Canola	plastid	2.14	1.85
Zm00001d013704_P001	Maize	plastid	2.86	1.78
KRH14348	Soybean	endoplasmic reticulum, extracellular, plasma membrane	0.71	0.38

Protein Annotations

EnsemblPlants:CDY19903	EnsemblPlantsGene:GSBRNA2T00009691001	GO:A0A078G5B2	GO:GO:0006457	GO:GO:0006810	GO:GO:0008150
GO:GO:0009987	GO:GO:0015031	InterPro:Trigger_fac_C	PFAM:PF05698	ProteinID:CDY19903	ProteinID:CDY19903.1
UniParc:UPI0004EE9BF0	UniProt:A0A078G5B2	MapMan:18.12.3	:	:	:

Description

BnaC09g31690DBnaC09g31690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G5B2]

Coordinates

chrLK032101:-:454300..455631

Molecular Weight (calculated)

16025.3 Da

IEP (calculated)

4.466

GRAVY (calculated)

0.086

Length

140 amino acids

Sequence
(BLAST)

001: MITLDVLNHV FFCFREPTLT LSCASLPAIH MVEVEIPQSL FEEQGRQFYG ARLLDSGKHL TLFLLFSFIG NMKLTEEQLA SLQHNLAVGD IFKCENLEFS
101: TDELVKEVDN SITEFKKHKQ EYDGECVKDL SIFFGIILDT

Best Arabidopsis Sequence Match ( AT5G55220.1 )
(BLAST)

001: MELCVISTTT TVKAINPFLP SITRRVSSRL FQSDSVLQFG GRLKKPISRP LDMSCVSRKI GFFGDFMSHG GNFRLFAAAS PAVETSVKED KLPADLKVTE
101: TVQANSSVKL SVEVPEIVCE DCYQRVLTEF MKLSKVPGFR PKTRVPENII VGFVGRQYVL RATVESILKR TLPHAMESVT GRALKDSIQI VSSFPDMEKA
201: YSKLKTLSYE VVVDVVPELK WNPEDGYKNM KVVVELGDEI DAKKACERQL RQKYKSLGAL KIVTERGLQV GDLAVVDISA TTIDEDGSTG QAIPDAESKG
301: FHFDTEEGNR LLPGFLDAII GIRAGESKSF TLVFPESWKQ ESLRGQRAQF TVDCKELFYR DLPTLDDSLA DKLLPGCTTL KEVEETLAKR CQEMEQEAKE
401: QATDNAILEQ IRKMVEVEIP QSLFEEQGRQ FYGARLLEIQ GNMKLNEDQL ASLSSQKAVN EFLETQRESI TNIIKQNIAV GDIFKRENLE FSTDELVKEV
501: ENSISEFKKH KQEFDEERVK DQVQEILEGA KVLEWLKDRA EIQYITR

Arabidopsis Description

TIGTrigger factor-like protein TIG, Chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.