Factsheet for GSMUA_Achr10P03550_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, endoplasmic reticulum

Predictor Summary:

nucleus 1
mitochondrion 1
endoplasmic reticulum 3
extracellular 2
golgi 2
plasma membrane 3
vacuole 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P12980_001
GSMUA_Achr3P17420_001
GSMUA_Achr4P20110_001
GSMUA_Achr7P05510_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55220.1	GSMUA_Achr3P17420_001	AT1G34430.1	21798944
AT5G55220.1	GSMUA_Achr3P12980_001	AT4G04020.1	21798944
AT5G55220.1	GSMUA_Achr4P20110_001	AT4G04020.1	21798944
AT5G55220.1	GSMUA_Achr7P05510_001	AT4G04020.1	21798944
AT5G55220.1	GSMUA_Achr10P...	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0090g01210.t01	Wine grape	plastid	60.88	64.74
Os06t0308000-01	Rice	plastid	58.07	61.64
TraesCS7B01G129300.1	Wheat	plastid	55.44	60.08
TraesCS7D01G224400.1	Wheat	plastid	55.44	60.08
HORVU7Hr1G045680.1	Barley	plastid	55.26	59.89
Zm00001d023292_P001	Maize	plastid	55.26	59.66
TraesCS7A01G222800.1	Wheat	plastid	54.91	59.51
KRH73811	Soybean	plastid	56.49	59.41
Bra002923.1-P	Field mustard	cytosol, nucleus, plastid	6.32	59.02
KRH14319	Soybean	plastid	56.32	58.9
EES16569	Sorghum	plastid	54.21	58.86
Solyc07g064950.2.1	Tomato	nucleus, plastid	53.86	58.25
PGSC0003DMT400057431	Potato	plastid	54.91	57.33
CDY20778	Canola	plastid	51.75	54.13
AT5G55220.1	Thale cress	plastid	51.93	54.11
CDY06597	Canola	plastid	51.93	54.01
Bra035563.1-P	Field mustard	plastid	51.58	53.95
KRH26213	Soybean	cytosol, extracellular, nucleus, plastid	10.88	53.45
CDY19903	Canola	extracellular	10.88	44.29
CDY19904	Canola	plastid	11.93	41.98
KRH14348	Soybean	endoplasmic reticulum, extracellular, plasma membrane	18.77	40.84
Zm00001d000318_P001	Maize	peroxisome	18.6	37.32
CDY17312	Canola	endoplasmic reticulum	24.39	36.29
Zm00001d047056_P001	Maize	plastid	19.3	32.74
Zm00001d013704_P001	Maize	plastid	10.0	25.33

Protein Annotations

Gene3D:1.10.3120.10	MapMan:18.12.3	Gene3D:3.10.50.40	Gene3D:3.30.70.1050	ncoils:Coil	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0006810	GO:GO:0008150
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009941	GO:GO:0009987	GO:GO:0015031
EnsemblPlantsGene:GSMUA_Achr10G03550_001	EnsemblPlants:GSMUA_Achr10P03550_001	EnsemblPlants:GSMUA_Achr10T03550_001	InterPro:IPR036611	InterPro:IPR037041	UniProt:M0RF32
HAMAP:MF_00303	PFAM:PF05697	PFAM:PF05698	PANTHER:PTHR30560	PANTHER:PTHR30560:SF3	SUPFAM:SSF102735
SUPFAM:SSF109998	SUPFAM:SSF54534	TIGRFAMs:TIGR00115	InterPro:Trig_fac	InterPro:Trigger_fac_C	InterPro:Trigger_fac_C_sf
InterPro:Trigger_fac_ribosome-bd_bac	InterPro:Trigger_fac_ribosome-bd_sf	InterPro:Trigger_fact/SurA_dom_sf	UniParc:UPI000295376E	SEG:seg	:

Description

Putative Trigger factor [Source:GMGC_GENE;Acc:GSMUA_Achr10G03550_001]

Coordinates

chr10:+:11546760..11556558

Molecular Weight (calculated)

64345.2 Da

IEP (calculated)

5.126

GRAVY (calculated)

-0.302

Length

570 amino acids

Sequence
(BLAST)

001: MTSKMYFGDA VYTPRLPLSF LLLPIAPCFL LMEAVLLNSA LRLLLPTPTR PSLYPVSIPQ TLSFSSSLSP PRFPIRISSR SHSLPGFFSH PSRNWRPFHV
101: SASAVAVQKT GKDRSPADVL VTETKEPNSS VRLSVEVPPA VCQQCYRKVL DEFAKQAKIP GFRPGKKVPE NILVNYIGGN NVQQAAIEAT LKKTLPQAMA
201: SVEGRALKDS VRIVTKFSEM YDVFSLQDAF RYEVVADVAP EVKWLSENKY KNLKIVVEID NIIEAQSASE RELQRRHKAL GLLRIVTDRG LQIGDLVVLD
301: IFAKTIGQDE SEGEKIPSAE TKGFHLDTEE SDNLLPGFLD SIIGIRQGET KSFPLQFPES WEQENLRGVR AQFTVECKEL FYRDLPQLDD SLAENVLPGC
401: NSLDQVREAI LQRCKEVEQT AIEQATDNAI LDQLSKIVEV DIPKSLLEEQ GRQLYGAKLL QLQVEKKINE SQLASLSSER AVGQFINNEK ENISKIIKQM
501: LAVGEIFKCE NLQFLTEELV KEVENSIAEF KRHNQEYDEE RVREQVQDVL EGAKVLEWLR ENAEIQYVKQ

Best Arabidopsis Sequence Match ( AT5G55220.1 )
(BLAST)

001: MELCVISTTT TVKAINPFLP SITRRVSSRL FQSDSVLQFG GRLKKPISRP LDMSCVSRKI GFFGDFMSHG GNFRLFAAAS PAVETSVKED KLPADLKVTE
101: TVQANSSVKL SVEVPEIVCE DCYQRVLTEF MKLSKVPGFR PKTRVPENII VGFVGRQYVL RATVESILKR TLPHAMESVT GRALKDSIQI VSSFPDMEKA
201: YSKLKTLSYE VVVDVVPELK WNPEDGYKNM KVVVELGDEI DAKKACERQL RQKYKSLGAL KIVTERGLQV GDLAVVDISA TTIDEDGSTG QAIPDAESKG
301: FHFDTEEGNR LLPGFLDAII GIRAGESKSF TLVFPESWKQ ESLRGQRAQF TVDCKELFYR DLPTLDDSLA DKLLPGCTTL KEVEETLAKR CQEMEQEAKE
401: QATDNAILEQ IRKMVEVEIP QSLFEEQGRQ FYGARLLEIQ GNMKLNEDQL ASLSSQKAVN EFLETQRESI TNIIKQNIAV GDIFKRENLE FSTDELVKEV
501: ENSISEFKKH KQEFDEERVK DQVQEILEGA KVLEWLKDRA EIQYITR

Arabidopsis Description

TIGTrigger factor-like protein TIG, Chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.