CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 3
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89437
CDX90850
CDX94540
CDY03145
CDY03368
CDY12039
CDY16684
CDY21291
CDY71809

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55220.1	CDY03145	AT1G34430.1	21798944
AT5G55220.1	CDY12039	AT1G34430.1	21798944
AT5G55220.1	CDX90850	AT4G04020.1	21798944
AT5G55220.1	CDX94540	AT4G04020.1	21798944
AT5G55220.1	CDY16684	AT4G04020.1	21798944
AT5G55220.1	CDY21291	AT4G04020.1	21798944
AT5G55220.1	CDY71809	AT4G04020.1	21798944
AT5G55220.1	CDX89437	AT4G25200.1	21798944
AT5G55220.1	CDY03368	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06597	Canola	plastid	68.52	20.26
CDY20778	Canola	plastid	67.9	20.18
AT5G55220.1	Thale cress	plastid	66.05	19.56
Solyc07g064950.2.1	Tomato	nucleus, plastid	48.77	14.99
PGSC0003DMT400057431	Potato	plastid	48.15	14.29
KRH14348	Soybean	endoplasmic reticulum, extracellular, plasma membrane	22.84	14.12
KRH73811	Soybean	plastid	46.3	13.84
VIT_19s0090g01210.t01	Wine grape	plastid	45.68	13.81
CDY17312	Canola	endoplasmic reticulum	32.1	13.58
KRH14319	Soybean	plastid	44.44	13.21
TraesCS7B01G129300.1	Wheat	plastid	41.36	12.74
HORVU7Hr1G045680.1	Barley	plastid	40.74	12.55
TraesCS7A01G222800.1	Wheat	plastid	40.74	12.55
TraesCS7D01G224400.1	Wheat	plastid	40.74	12.55
Os06t0308000-01	Rice	plastid	40.74	12.29
EES16569	Sorghum	plastid	38.89	12.0
Zm00001d023292_P001	Maize	plastid	38.89	11.93
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	41.98	11.93
Zm00001d000318_P001	Maize	peroxisome	16.67	9.51
Zm00001d047056_P001	Maize	plastid	15.43	7.44
Zm00001d013704_P001	Maize	plastid	9.26	6.67
KRH26213	Soybean	cytosol, extracellular, nucleus, plastid	1.85	2.59
CDY19903	Canola	extracellular	1.85	2.14

Protein Annotations

EnsemblPlants:CDY19904	EnsemblPlantsGene:GSBRNA2T00009692001	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	InterPro:Trig_fac
PANTHER:PTHR30560	PANTHER:PTHR30560:SF3	ProteinID:CDY19904	ProteinID:CDY19904.1	UniParc:UPI0004EF25F4	UniProt:A0A078G3A5
MapMan:35.1	:	:	:	:	:

Description

BnaC09g31700DBnaC09g31700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G3A5]

Coordinates

chrLK032101:-:455701..456892

Molecular Weight (calculated)

17897.1 Da

IEP (calculated)

7.291

GRAVY (calculated)

0.403

Length

162 amino acids

Sequence
(BLAST)

001: MCVALRLDVT FNCRFLGSVP GKRVPENIIV GFVGRQYVLR ATVEFIFKRT LPRAMEFLTG KASKDSIKIV SSFPDMENAY YQLKTLSYEL VGDLAIIDIS
101: ATTIDEGSTG QAMPNAESKV LELVICFHFD TEEGNILLHG FLGSILGIRA GKRIIVILAC VF

Best Arabidopsis Sequence Match ( AT5G55220.1 )
(BLAST)

001: MELCVISTTT TVKAINPFLP SITRRVSSRL FQSDSVLQFG GRLKKPISRP LDMSCVSRKI GFFGDFMSHG GNFRLFAAAS PAVETSVKED KLPADLKVTE
101: TVQANSSVKL SVEVPEIVCE DCYQRVLTEF MKLSKVPGFR PKTRVPENII VGFVGRQYVL RATVESILKR TLPHAMESVT GRALKDSIQI VSSFPDMEKA
201: YSKLKTLSYE VVVDVVPELK WNPEDGYKNM KVVVELGDEI DAKKACERQL RQKYKSLGAL KIVTERGLQV GDLAVVDISA TTIDEDGSTG QAIPDAESKG
301: FHFDTEEGNR LLPGFLDAII GIRAGESKSF TLVFPESWKQ ESLRGQRAQF TVDCKELFYR DLPTLDDSLA DKLLPGCTTL KEVEETLAKR CQEMEQEAKE
401: QATDNAILEQ IRKMVEVEIP QSLFEEQGRQ FYGARLLEIQ GNMKLNEDQL ASLSSQKAVN EFLETQRESI TNIIKQNIAV GDIFKRENLE FSTDELVKEV
501: ENSISEFKKH KQEFDEERVK DQVQEILEGA KVLEWLKDRA EIQYITR

Arabidopsis Description

TIGTrigger factor-like protein TIG, Chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.