CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
mitochondrion 2
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89437
CDX90850
CDX94540
CDY03145
CDY03368
CDY12039
CDY16684
CDY21291
CDY71809

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55220.1	CDY03145	AT1G34430.1	21798944
AT5G55220.1	CDY12039	AT1G34430.1	21798944
AT5G55220.1	CDX90850	AT4G04020.1	21798944
AT5G55220.1	CDX94540	AT4G04020.1	21798944
AT5G55220.1	CDY16684	AT4G04020.1	21798944
AT5G55220.1	CDY21291	AT4G04020.1	21798944
AT5G55220.1	CDY71809	AT4G04020.1	21798944
AT5G55220.1	CDX89437	AT4G25200.1	21798944
AT5G55220.1	CDY03368	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19903	Canola	extracellular	17.75	48.57
CDY20778	Canola	plastid	50.91	35.78
CDY06597	Canola	plastid	50.91	35.58
AT5G55220.1	Thale cress	plastid	50.13	35.1
CDY19904	Canola	plastid	13.58	32.1
VIT_19s0090g01210.t01	Wine grape	plastid	40.73	29.1
KRH73811	Soybean	plastid	39.43	27.86
KRH14319	Soybean	plastid	39.43	27.71
Solyc07g064950.2.1	Tomato	nucleus, plastid	37.86	27.51
PGSC0003DMT400057431	Potato	plastid	38.12	26.74
KRH26213	Soybean	cytosol, extracellular, nucleus, plastid	8.09	26.72
HORVU7Hr1G045680.1	Barley	plastid	35.25	25.67
TraesCS7D01G224400.1	Wheat	plastid	35.25	25.67
TraesCS7A01G222800.1	Wheat	plastid	34.99	25.48
TraesCS7B01G129300.1	Wheat	plastid	34.99	25.48
Os06t0308000-01	Rice	plastid	34.46	24.58
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	36.29	24.39
Zm00001d023292_P001	Maize	plastid	33.42	24.24
EES16569	Sorghum	plastid	31.59	23.05
KRH14348	Soybean	endoplasmic reticulum, extracellular, plasma membrane	12.01	17.56
Zm00001d000318_P001	Maize	peroxisome	10.18	13.73
Zm00001d047056_P001	Maize	plastid	10.44	11.9
Zm00001d013704_P001	Maize	plastid	6.53	11.11

Protein Annotations

EnsemblPlants:CDY17312	EnsemblPlantsGene:GSBRNA2T00095403001	GO:A0A078FX49	GO:GO:0006457	GO:GO:0006810	GO:GO:0008150
GO:GO:0009987	GO:GO:0015031	InterPro:Trig_fac	InterPro:Trigger_fac_C	PANTHER:PTHR30560	PANTHER:PTHR30560:SF3
PFAM:PF05698	ProteinID:CDY17312	ProteinID:CDY17312.1	UniParc:UPI0004EDAD5D	UniProt:A0A078FX49	MapMan:18.12.3

Description

BnaA10g09460DBnaA10g09460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FX49]

Coordinates

chrLK032072:+:198393..204660

Molecular Weight (calculated)

44361.2 Da

IEP (calculated)

8.131

GRAVY (calculated)

-0.043

Length

383 amino acids

Sequence
(BLAST)

001: MSTFQLLLKS VQYVLRATVE SILKRTLPHA MESMTGKALK DYKIVRSFPD MDKAYSQLKT LRFNILFICK NLETTVWNTE NGYKDMKIVK YKSLGAFKIV
101: TARGLHVTLR ITSHVLVLLL ENLTYYGSTG QAMPDAESKC RESEQGRESK SFSLVFPESW KQENLCANVL RTILKRFINL DDSLADKMFP GCTIKHFKAV
201: TLFISLIENI VLCCFLFFCF QMVEVEIPQS LFEEQVRQFY GARLLEIQPK CVGCKVQSVI SLGPLPVQNR YFGSGYTMGF GYSIKRPSLV GDIFKRESLE
301: FSTDELVKEV DNSITEFRKH KQEYDGEHVK DQVQDILEGA KVLEKNELKF NTLLVESLIS IDYVYVLFYE HFFVLELYWI HRI

Best Arabidopsis Sequence Match ( AT5G55220.1 )
(BLAST)

001: MELCVISTTT TVKAINPFLP SITRRVSSRL FQSDSVLQFG GRLKKPISRP LDMSCVSRKI GFFGDFMSHG GNFRLFAAAS PAVETSVKED KLPADLKVTE
101: TVQANSSVKL SVEVPEIVCE DCYQRVLTEF MKLSKVPGFR PKTRVPENII VGFVGRQYVL RATVESILKR TLPHAMESVT GRALKDSIQI VSSFPDMEKA
201: YSKLKTLSYE VVVDVVPELK WNPEDGYKNM KVVVELGDEI DAKKACERQL RQKYKSLGAL KIVTERGLQV GDLAVVDISA TTIDEDGSTG QAIPDAESKG
301: FHFDTEEGNR LLPGFLDAII GIRAGESKSF TLVFPESWKQ ESLRGQRAQF TVDCKELFYR DLPTLDDSLA DKLLPGCTTL KEVEETLAKR CQEMEQEAKE
401: QATDNAILEQ IRKMVEVEIP QSLFEEQGRQ FYGARLLEIQ GNMKLNEDQL ASLSSQKAVN EFLETQRESI TNIIKQNIAV GDIFKRENLE FSTDELVKEV
501: ENSISEFKKH KQEFDEERVK DQVQEILEGA KVLEWLKDRA EIQYITR

Arabidopsis Description

TIGTrigger factor-like protein TIG, Chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.