Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06597 | Canola | plastid | 82.08 | 81.93 |
| CDY20778 | Canola | plastid | 80.99 | 81.28 |
| Bra035563.1-P | Field mustard | plastid | 80.8 | 81.1 |
| Bra002923.1-P | Field mustard | cytosol, nucleus, plastid | 8.04 | 72.13 |
| CDY19904 | Canola | plastid | 19.56 | 66.05 |
| VIT_19s0090g01210.t01 | Wine grape | plastid | 61.24 | 62.5 |
| Solyc07g064950.2.1 | Tomato | nucleus, plastid | 59.6 | 61.86 |
| KRH73811 | Soybean | plastid | 59.23 | 59.78 |
| PGSC0003DMT400057431 | Potato | plastid | 59.6 | 59.71 |
| KRH14319 | Soybean | plastid | 58.5 | 58.72 |
| KRH26213 | Soybean | cytosol, extracellular, nucleus, plastid | 12.25 | 57.76 |
| CDY19903 | Canola | extracellular | 14.26 | 55.71 |
| HORVU7Hr1G045680.1 | Barley | plastid | 50.82 | 52.85 |
| TraesCS7D01G224400.1 | Wheat | plastid | 50.82 | 52.85 |
| Os06t0308000-01 | Rice | plastid | 51.74 | 52.7 |
| TraesCS7A01G222800.1 | Wheat | plastid | 50.64 | 52.66 |
| TraesCS7B01G129300.1 | Wheat | plastid | 50.64 | 52.66 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 54.11 | 51.93 |
| Zm00001d023292_P001 | Maize | plastid | 49.73 | 51.52 |
| EES16569 | Sorghum | plastid | 48.99 | 51.05 |
| CDY17312 | Canola | endoplasmic reticulum | 35.1 | 50.13 |
| KRH14348 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 18.1 | 37.79 |
| Zm00001d000318_P001 | Maize | peroxisome | 15.72 | 30.28 |
| Zm00001d047056_P001 | Maize | plastid | 16.82 | 27.38 |
| Zm00001d013704_P001 | Maize | plastid | 8.78 | 21.33 |
Protein Annotations
| Gene3D:1.10.3120.10 | MapMan:18.12.3 | Gene3D:3.10.50.40 | Gene3D:3.30.70.1050 | EntrezGene:835615 | ProteinID:AED96601.1 |
| EMBL:AK222129 | ArrayExpress:AT5G55220 | EnsemblPlantsGene:AT5G55220 | RefSeq:AT5G55220 | TAIR:AT5G55220 | RefSeq:AT5G55220-TAIR-G |
| EnsemblPlants:AT5G55220.1 | TAIR:AT5G55220.1 | EMBL:AY074845 | Unigene:At.29456 | ProteinID:BAB08591.1 | EMBL:BT002296 |
| ncoils:Coil | GO:GO:0000413 | GO:GO:0003674 | GO:GO:0003755 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006457 | GO:GO:0006464 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009941 |
| GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016853 | GO:GO:0019538 | InterPro:IPR001179 | InterPro:IPR036611 |
| InterPro:IPR037041 | HAMAP:MF_00303 | RefSeq:NP_200333.2 | PFAM:PF05697 | PFAM:PF05698 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | InterPro:PPIase_FKBP_dom | PFscan:PS50059 | PANTHER:PTHR30560 | PANTHER:PTHR30560:SF3 |
| UniProt:Q8S9L5 | SUPFAM:SSF102735 | SUPFAM:SSF109998 | SUPFAM:SSF54534 | InterPro:Trig_fac | InterPro:Trigger_fac_C |
| InterPro:Trigger_fac_C_sf | InterPro:Trigger_fac_ribosome-bd_bac | InterPro:Trigger_fac_ribosome-bd_sf | InterPro:Trigger_fact/SurA_dom_sf | UniParc:UPI00000AC2B6 | : |
Description
TIGTrigger factor-like protein TIG, Chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L5]
Coordinates
chr5:+:22397457..22400856
Molecular Weight (calculated)
61737.0 Da
IEP (calculated)
4.977
GRAVY (calculated)
-0.359
Length
547 amino acids
Sequence
(BLAST)
(BLAST)
001: MELCVISTTT TVKAINPFLP SITRRVSSRL FQSDSVLQFG GRLKKPISRP LDMSCVSRKI GFFGDFMSHG GNFRLFAAAS PAVETSVKED KLPADLKVTE
101: TVQANSSVKL SVEVPEIVCE DCYQRVLTEF MKLSKVPGFR PKTRVPENII VGFVGRQYVL RATVESILKR TLPHAMESVT GRALKDSIQI VSSFPDMEKA
201: YSKLKTLSYE VVVDVVPELK WNPEDGYKNM KVVVELGDEI DAKKACERQL RQKYKSLGAL KIVTERGLQV GDLAVVDISA TTIDEDGSTG QAIPDAESKG
301: FHFDTEEGNR LLPGFLDAII GIRAGESKSF TLVFPESWKQ ESLRGQRAQF TVDCKELFYR DLPTLDDSLA DKLLPGCTTL KEVEETLAKR CQEMEQEAKE
401: QATDNAILEQ IRKMVEVEIP QSLFEEQGRQ FYGARLLEIQ GNMKLNEDQL ASLSSQKAVN EFLETQRESI TNIIKQNIAV GDIFKRENLE FSTDELVKEV
501: ENSISEFKKH KQEFDEERVK DQVQEILEGA KVLEWLKDRA EIQYITR
101: TVQANSSVKL SVEVPEIVCE DCYQRVLTEF MKLSKVPGFR PKTRVPENII VGFVGRQYVL RATVESILKR TLPHAMESVT GRALKDSIQI VSSFPDMEKA
201: YSKLKTLSYE VVVDVVPELK WNPEDGYKNM KVVVELGDEI DAKKACERQL RQKYKSLGAL KIVTERGLQV GDLAVVDISA TTIDEDGSTG QAIPDAESKG
301: FHFDTEEGNR LLPGFLDAII GIRAGESKSF TLVFPESWKQ ESLRGQRAQF TVDCKELFYR DLPTLDDSLA DKLLPGCTTL KEVEETLAKR CQEMEQEAKE
401: QATDNAILEQ IRKMVEVEIP QSLFEEQGRQ FYGARLLEIQ GNMKLNEDQL ASLSSQKAVN EFLETQRESI TNIIKQNIAV GDIFKRENLE FSTDELVKEV
501: ENSISEFKKH KQEFDEERVK DQVQEILEGA KVLEWLKDRA EIQYITR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.