Factsheet for PGSC0003DMT400057431

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400012249
PGSC0003DMT400023831
PGSC0003DMT400043112

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55220.1	PGSC0003DMT400023831	AT1G34430.1	21798944
AT5G55220.1	PGSC0003DMT400043112	AT4G04020.1	21798944
AT5G55220.1	PGSC0003DMT400012249	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g064950.2.1	Tomato	nucleus, plastid	91.58	94.88
VIT_19s0090g01210.t01	Wine grape	plastid	65.2	66.42
KRH73811	Soybean	plastid	65.2	65.68
KRH14319	Soybean	plastid	64.29	64.4
Bra002923.1-P	Field mustard	cytosol, nucleus, plastid	7.14	63.93
CDY20778	Canola	plastid	59.89	60.0
Bra035563.1-P	Field mustard	plastid	59.71	59.82
AT5G55220.1	Thale cress	plastid	59.71	59.6
CDY06597	Canola	plastid	59.16	58.94
KRH26213	Soybean	cytosol, extracellular, nucleus, plastid	12.45	58.62
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	57.33	54.91
EES16569	Sorghum	plastid	51.83	53.9
Os06t0308000-01	Rice	plastid	52.38	53.26
TraesCS7D01G224400.1	Wheat	plastid	51.28	53.23
TraesCS7A01G222800.1	Wheat	plastid	51.1	53.04
TraesCS7B01G129300.1	Wheat	plastid	51.1	53.04
HORVU7Hr1G045680.1	Barley	plastid	50.92	52.85
Zm00001d023292_P001	Maize	plastid	51.1	52.84
CDY19904	Canola	plastid	14.29	48.15
CDY19903	Canola	extracellular	12.27	47.86
KRH14348	Soybean	endoplasmic reticulum, extracellular, plasma membrane	21.61	45.04
CDY17312	Canola	endoplasmic reticulum	26.74	38.12
Zm00001d000318_P001	Maize	peroxisome	16.48	31.69
Zm00001d047056_P001	Maize	plastid	17.77	28.87
Zm00001d013704_P001	Maize	plastid	11.17	27.11

Protein Annotations

Gene3D:1.10.3120.10	EntrezGene:102600021	MapMan:18.12.3	Gene3D:3.10.50.40	Gene3D:3.30.70.1050	ncoils:Coil
GO:GO:0006457	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	InterPro:IPR036611
InterPro:IPR037041	UniProt:M1C114	HAMAP:MF_00303	PFAM:PF05697	PFAM:PF05698	EnsemblPlantsGene:PGSC0003DMG400022300
PGSC:PGSC0003DMG400022300	EnsemblPlants:PGSC0003DMT400057431	PANTHER:PTHR30560	PANTHER:PTHR30560:SF3	SUPFAM:SSF102735	SUPFAM:SSF109998
SUPFAM:SSF54534	TIGRFAMs:TIGR00115	InterPro:Trig_fac	InterPro:Trigger_fac_C	InterPro:Trigger_fac_C_sf	InterPro:Trigger_fac_ribosome-bd_bac
InterPro:Trigger_fac_ribosome-bd_sf	InterPro:Trigger_fact/SurA_dom_sf	UniParc:UPI00029570A4	RefSeq:XP_006346187.1	SEG:seg	:

Description

Trigger factor [Source:PGSC_GENE;Acc:PGSC0003DMG400022300]

Coordinates

chr7:+:55112934..55119598

Molecular Weight (calculated)

61214.8 Da

IEP (calculated)

4.817

GRAVY (calculated)

-0.338

Length

546 amino acids

Sequence
(BLAST)

001: MATPISIQLN PSIFSFPSNS TKAQFFQPND KFLLKQKPNS SSRQFSSSFL QQQLPVHQLA SARLVAAAAA AAAAAAAAAA SGVVETVEDK LPADLHVTET
101: QEPNSRIRLS VEVPTVVCED CYKKVIKEFM RRSKVPGFRP GKNVPEDILV GFVGKQNIQN AVVEAILKRT LPHAMSSVTR NAYEDSIRIV TKFEDMEKTY
201: LSLNCLRYDV VVDVAPEIKW KPDDAYKNIK VVVELDSDID AQRASEKELI RRHKSLGALR IVTDRGLQVG DVAVIDISAT TIEQDGSDAK TIPAAESKGF
301: NFDTEDGDNV LPGFRDSIIG IKRGETKSFP LVFPDSWKQE DLRGVHAQFT VACKELFYRD LPELNDSIAE RLLPGCSSIE EVKQALLQRC LEVEQAAKDQ
401: ATDNAILDQL YKMVEVDIPQ SLFQEQGRQL YGAQLLQLQA NMKLNEQQLA SLSSPRAVNE FLETQKENII SIIKQNLAVG DIFTRENLQF STEELVKEVQ
501: NSIQEFQQHQ QEYDEDRVKL QVQEVLEGAK VLEWLRENAE IQYITR

Best Arabidopsis Sequence Match ( AT5G55220.1 )
(BLAST)

001: MELCVISTTT TVKAINPFLP SITRRVSSRL FQSDSVLQFG GRLKKPISRP LDMSCVSRKI GFFGDFMSHG GNFRLFAAAS PAVETSVKED KLPADLKVTE
101: TVQANSSVKL SVEVPEIVCE DCYQRVLTEF MKLSKVPGFR PKTRVPENII VGFVGRQYVL RATVESILKR TLPHAMESVT GRALKDSIQI VSSFPDMEKA
201: YSKLKTLSYE VVVDVVPELK WNPEDGYKNM KVVVELGDEI DAKKACERQL RQKYKSLGAL KIVTERGLQV GDLAVVDISA TTIDEDGSTG QAIPDAESKG
301: FHFDTEEGNR LLPGFLDAII GIRAGESKSF TLVFPESWKQ ESLRGQRAQF TVDCKELFYR DLPTLDDSLA DKLLPGCTTL KEVEETLAKR CQEMEQEAKE
401: QATDNAILEQ IRKMVEVEIP QSLFEEQGRQ FYGARLLEIQ GNMKLNEDQL ASLSSQKAVN EFLETQRESI TNIIKQNIAV GDIFKRENLE FSTDELVKEV
501: ENSISEFKKH KQEFDEERVK DQVQEILEGA KVLEWLKDRA EIQYITR

Arabidopsis Description

TIGTrigger factor-like protein TIG, Chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.