Factsheet for Solyc07g064950.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g081170.2.1
Solyc08g078700.2.1
Solyc11g017250.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55220.1	Solyc11g017250.1.1	AT1G34430.1	21798944
AT5G55220.1	Solyc02g081170.2.1	AT4G04020.1	21798944
AT5G55220.1	Solyc08g078700.2.1	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057431	Potato	plastid	94.88	91.58
VIT_19s0090g01210.t01	Wine grape	plastid	66.79	65.67
KRH73811	Soybean	plastid	66.41	64.58
Bra002923.1-P	Field mustard	cytosol, nucleus, plastid	7.4	63.93
KRH14319	Soybean	plastid	65.46	63.3
AT5G55220.1	Thale cress	plastid	61.86	59.6
CDY20778	Canola	plastid	61.48	59.45
Bra035563.1-P	Field mustard	plastid	61.29	59.27
CDY06597	Canola	plastid	61.1	58.76
KRH26213	Soybean	cytosol, extracellular, nucleus, plastid	12.9	58.62
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	58.25	53.86
Os06t0308000-01	Rice	plastid	54.65	53.63
EES16569	Sorghum	plastid	52.37	52.57
HORVU7Hr1G045680.1	Barley	plastid	52.18	52.28
TraesCS7A01G222800.1	Wheat	plastid	52.18	52.28
TraesCS7B01G129300.1	Wheat	plastid	52.18	52.28
TraesCS7D01G224400.1	Wheat	plastid	52.18	52.28
Zm00001d023292_P001	Maize	plastid	51.8	51.7
CDY19904	Canola	plastid	14.99	48.77
CDY19903	Canola	extracellular	12.71	47.86
KRH14348	Soybean	endoplasmic reticulum, extracellular, plasma membrane	21.82	43.89
CDY17312	Canola	endoplasmic reticulum	27.51	37.86
Zm00001d000318_P001	Maize	peroxisome	16.7	30.99
Zm00001d047056_P001	Maize	plastid	17.84	27.98
Zm00001d013704_P001	Maize	plastid	11.39	26.67

Protein Annotations

Gene3D:1.10.3120.10	MapMan:18.12.3	Gene3D:3.10.50.40	Gene3D:3.30.70.1050	ncoils:Coil	GO:GO:0006457
GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	InterPro:IPR036611	InterPro:IPR037041
UniProt:K4CHH4	HAMAP:MF_00303	PFAM:PF05697	PFAM:PF05698	PANTHER:PTHR30560	PANTHER:PTHR30560:SF3
SUPFAM:SSF102735	SUPFAM:SSF109998	SUPFAM:SSF54534	EnsemblPlantsGene:Solyc07g064950.2	EnsemblPlants:Solyc07g064950.2.1	TIGRFAMs:TIGR00115
InterPro:Trig_fac	InterPro:Trigger_fac_C	InterPro:Trigger_fac_C_sf	InterPro:Trigger_fac_ribosome-bd_bac	InterPro:Trigger_fac_ribosome-bd_sf	InterPro:Trigger_fact/SurA_dom_sf
UniParc:UPI000276C83D	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:+:66902002..66908141

Molecular Weight (calculated)

59269.6 Da

IEP (calculated)

4.698

GRAVY (calculated)

-0.334

Length

527 amino acids

Sequence
(BLAST)

001: MATPISIQLN PSILSFPSNS TKAQFFQLND KFLLKPNLSS RQFSSSLVAS ARLVAAAAAA ASGVVETVED KLPADLHVTE TQEPNSRIRL TVEVPTVVCE
101: DCYKQVIKEF MRRSKVPGFR PGKNVPEDIL VGFVGKQNIQ NAVVEAILKR TLPHAMSSVT RNAYEDSIRI VTKFEDMEKT YLSLNCLRYD VVVDVAPEIK
201: WKPDDAYKNI KVAVELDSDM DAQRASEKEL IRRHKSLGAL KIVTDRGLQV GDVAVIDISA TTIEQDGSDA KTIPAAESKG FNFDTEEGDN VLPGFRDSII
301: GIKRGETKSF PLVFPDSWKQ EDLRGVHAQF TVACKELFYR DLPELNDAMA ERLLPGCSSI EEVKQALLQR CLEVEQAAKD QATDNAILDQ LYKMVEVDIP
401: QSLFQEQGRQ LYGAQLLQLQ ANMKLNEQQL ASLSSPRAVN EFLETQKENI ISIIKQNLAV GDIFTRENLQ FSTEELVKEV QNSIQEFQQH QQEYDEDRVK
501: LQVQEVLEGA KVLEWLRENA EIQYITR

Best Arabidopsis Sequence Match ( AT5G55220.1 )
(BLAST)

001: MELCVISTTT TVKAINPFLP SITRRVSSRL FQSDSVLQFG GRLKKPISRP LDMSCVSRKI GFFGDFMSHG GNFRLFAAAS PAVETSVKED KLPADLKVTE
101: TVQANSSVKL SVEVPEIVCE DCYQRVLTEF MKLSKVPGFR PKTRVPENII VGFVGRQYVL RATVESILKR TLPHAMESVT GRALKDSIQI VSSFPDMEKA
201: YSKLKTLSYE VVVDVVPELK WNPEDGYKNM KVVVELGDEI DAKKACERQL RQKYKSLGAL KIVTERGLQV GDLAVVDISA TTIDEDGSTG QAIPDAESKG
301: FHFDTEEGNR LLPGFLDAII GIRAGESKSF TLVFPESWKQ ESLRGQRAQF TVDCKELFYR DLPTLDDSLA DKLLPGCTTL KEVEETLAKR CQEMEQEAKE
401: QATDNAILEQ IRKMVEVEIP QSLFEEQGRQ FYGARLLEIQ GNMKLNEDQL ASLSSQKAVN EFLETQRESI TNIIKQNIAV GDIFKRENLE FSTDELVKEV
501: ENSISEFKKH KQEFDEERVK DQVQEILEGA KVLEWLKDRA EIQYITR

Arabidopsis Description

TIGTrigger factor-like protein TIG, Chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.