CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91819
KRH11500
KRH23958
KRH34962
KRH36517
KRH39841

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55220.1	KRG91819	AT1G34430.1	21798944
AT5G55220.1	KRH34962	AT1G34430.1	21798944
AT5G55220.1	KRH11500	AT4G04020.1	21798944
AT5G55220.1	KRH36517	AT4G04020.1	21798944
AT5G55220.1	KRH23958	AT4G25200.1	21798944
AT5G55220.1	KRH39841	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14319	Soybean	plastid	62.98	30.28
KRH73811	Soybean	plastid	61.07	29.52
Zm00001d000318_P001	Maize	peroxisome	25.95	23.94
VIT_19s0090g01210.t01	Wine grape	plastid	48.47	23.69
CDY19904	Canola	plastid	14.12	22.84
Zm00001d047056_P001	Maize	plastid	28.63	22.32
Solyc07g064950.2.1	Tomato	nucleus, plastid	43.89	21.82
PGSC0003DMT400057431	Potato	plastid	45.04	21.61
Zm00001d013704_P001	Maize	plastid	16.79	19.56
CDY06597	Canola	plastid	40.46	19.34
CDY20778	Canola	plastid	39.69	19.08
Bra035563.1-P	Field mustard	plastid	39.31	18.9
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	40.84	18.77
AT5G55220.1	Thale cress	plastid	37.79	18.1
Os06t0308000-01	Rice	plastid	35.11	17.13
TraesCS7A01G222800.1	Wheat	plastid	33.97	16.92
TraesCS7B01G129300.1	Wheat	plastid	33.97	16.92
HORVU7Hr1G045680.1	Barley	plastid	33.59	16.73
TraesCS7D01G224400.1	Wheat	plastid	33.59	16.73
EES16569	Sorghum	plastid	33.21	16.57
Zm00001d023292_P001	Maize	plastid	32.44	16.1
CDY17312	Canola	endoplasmic reticulum	17.56	12.01
KRH26213	Soybean	cytosol, extracellular, nucleus, plastid	0.38	0.86
CDY19903	Canola	extracellular	0.38	0.71
Bra002923.1-P	Field mustard	cytosol, nucleus, plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.110.10	MapMan:18.12.3	Gene3D:3.30.70.1050	EMBL:ACUP02008500	InterPro:Bifun_inhib/LTP/seed_sf	InterPro:Bifunc_inhib/LTP/seed_store
EnsemblPlantsGene:GLYMA_14G020800	GO:GO:0006457	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031
InterPro:IPR036611	UniProt:K7M4H0	EnsemblPlants:KRH14348	ProteinID:KRH14348	ProteinID:KRH14348.1	PFAM:PF05697
PFAM:PF14368	PANTHER:PTHR30560	PANTHER:PTHR30560:SF3	SUPFAM:SSF102735	SUPFAM:SSF47699	SignalP:SignalP-noTM
InterPro:Trig_fac	InterPro:Trigger_fac_ribosome-bd_bac	InterPro:Trigger_fac_ribosome-bd_sf	UniParc:UPI000296F996	:	:

Description

hypothetical protein

Coordinates

chr14:+:1470828..1473655

Molecular Weight (calculated)

28921.0 Da

IEP (calculated)

7.592

GRAVY (calculated)

-0.071

Length

262 amino acids

Sequence
(BLAST)

001: MGVRGSSVLA MLVLGGISAE TETEGILGTT PTPFEYGDNK AIGLKCGRYV SRIGPKEPPS QACCQSLEGA DIPCLCQYFT IYALLFSLEK GVYVRLHVEV
101: PSLVCEDCYK RVIAEFMKQA KIPGFRPGKK VPESILISYV GSQNVQKATI ESILRRTLSH AMTSVTGRAL QESVRIVTKF SEMEETYSSL GSLGYDVLVD
201: IAPEIKWIPD NNAYKNLKIV VEMDSDIDAH TASEQEFRRR YKSIGALKVV TDRATGWRCC CP

Best Arabidopsis Sequence Match ( AT5G55220.1 )
(BLAST)

001: MELCVISTTT TVKAINPFLP SITRRVSSRL FQSDSVLQFG GRLKKPISRP LDMSCVSRKI GFFGDFMSHG GNFRLFAAAS PAVETSVKED KLPADLKVTE
101: TVQANSSVKL SVEVPEIVCE DCYQRVLTEF MKLSKVPGFR PKTRVPENII VGFVGRQYVL RATVESILKR TLPHAMESVT GRALKDSIQI VSSFPDMEKA
201: YSKLKTLSYE VVVDVVPELK WNPEDGYKNM KVVVELGDEI DAKKACERQL RQKYKSLGAL KIVTERGLQV GDLAVVDISA TTIDEDGSTG QAIPDAESKG
301: FHFDTEEGNR LLPGFLDAII GIRAGESKSF TLVFPESWKQ ESLRGQRAQF TVDCKELFYR DLPTLDDSLA DKLLPGCTTL KEVEETLAKR CQEMEQEAKE
401: QATDNAILEQ IRKMVEVEIP QSLFEEQGRQ FYGARLLEIQ GNMKLNEDQL ASLSSQKAVN EFLETQRESI TNIIKQNIAV GDIFKRENLE FSTDELVKEV
501: ENSISEFKKH KQEFDEERVK DQVQEILEGA KVLEWLKDRA EIQYITR

Arabidopsis Description

TIGTrigger factor-like protein TIG, Chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.