Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G224400.1 | Wheat | plastid | 99.05 | 99.05 |
| TraesCS7B01G129300.1 | Wheat | plastid | 98.29 | 98.29 |
| HORVU7Hr1G045680.1 | Barley | plastid | 96.96 | 96.96 |
| Os06t0308000-01 | Rice | plastid | 81.18 | 79.52 |
| Zm00001d023292_P001 | Maize | plastid | 78.71 | 78.41 |
| EES16569 | Sorghum | plastid | 77.95 | 78.1 |
| VIT_19s0090g01210.t01 | Wine grape | plastid | 56.46 | 55.41 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 59.51 | 54.91 |
| Solyc07g064950.2.1 | Tomato | nucleus, plastid | 52.28 | 52.18 |
| PGSC0003DMT400057431 | Potato | plastid | 53.04 | 51.1 |
| Bra002923.1-P | Field mustard | cytosol, nucleus, plastid | 5.89 | 50.82 |
| CDY20778 | Canola | plastid | 52.47 | 50.64 |
| AT5G55220.1 | Thale cress | plastid | 52.66 | 50.64 |
| CDY06597 | Canola | plastid | 52.66 | 50.55 |
| Bra035563.1-P | Field mustard | plastid | 52.28 | 50.46 |
| KRH73811 | Soybean | plastid | 51.9 | 50.37 |
| KRH14319 | Soybean | plastid | 51.9 | 50.09 |
| KRH26213 | Soybean | cytosol, extracellular, nucleus, plastid | 11.03 | 50.0 |
| Zm00001d000318_P001 | Maize | peroxisome | 24.52 | 45.42 |
| Zm00001d047056_P001 | Maize | plastid | 28.52 | 44.64 |
| CDY19904 | Canola | plastid | 12.55 | 40.74 |
| CDY19903 | Canola | extracellular | 10.08 | 37.86 |
| CDY17312 | Canola | endoplasmic reticulum | 25.48 | 34.99 |
| KRH14348 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 16.92 | 33.97 |
| Zm00001d013704_P001 | Maize | plastid | 13.69 | 32.0 |
Protein Annotations
| Gene3D:1.10.3120.10 | MapMan:18.12.3 | Gene3D:3.10.50.40 | Gene3D:3.30.70.1050 | ncoils:Coil | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006457 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009941 | GO:GO:0009987 | GO:GO:0015031 |
| InterPro:IPR036611 | InterPro:IPR037041 | HAMAP:MF_00303 | PFAM:PF05697 | PFAM:PF05698 | PANTHER:PTHR30560 |
| PANTHER:PTHR30560:SF3 | SUPFAM:SSF102735 | SUPFAM:SSF109998 | SUPFAM:SSF54534 | TIGRFAMs:TIGR00115 | EnsemblPlantsGene:TraesCS7A01G222800 |
| EnsemblPlants:TraesCS7A01G222800.1 | InterPro:Trig_fac | InterPro:Trigger_fac_C | InterPro:Trigger_fac_C_sf | InterPro:Trigger_fac_ribosome-bd_bac | InterPro:Trigger_fac_ribosome-bd_sf |
| InterPro:Trigger_fact/SurA_dom_sf | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7A:+:191902892..191908520
Molecular Weight (calculated)
58904.1 Da
IEP (calculated)
4.852
GRAVY (calculated)
-0.337
Length
526 amino acids
Sequence
(BLAST)
(BLAST)
001: MELATAAVVS TASIHPGRSH FSTPRAASWP SSSSPSSSRS LSTSASISRS QRRRLPVASA AVELREAAAG GGDSVRVIET PQPNSSVKFS VEVPPSICQE
101: CYQTTLLEYS KRFKVPGFRP GKIVPENVLL NYVGPQHVRA ATVEAILRHT LPQALSSVEE RALEDSVRIL TKFDDMNEAF SLDHVFRYDV AVDVVPEVRW
201: LSEDKYKNLK VVIEIDEIVD AEKAAELELK RRRKSLGLLR IVPDRGLQVG DLVVLDILAE TITTDGSKGE KIPSAESTGF HLDTEENTNL VPGFLGSLIG
301: IRPGETRTFP IQFPESFEQE TLQGVRAQFT VVCKELFFRE LPELDDLLAA KLLPGCNTID EVKERILERC KEVEKTAIEQ ATDNAILDQL GKLVDVDVPR
401: SLFQEQGQQL YGAKLLQLQA ERKLDKDQLA SLSSEKSVQE YLKGERENIT RIIKQMLVVG EIFKAENLQY STDQLVKEVE NSIEEFKRYN QDYDEGNIKQ
501: QVQDVLEAAK VLEWLKENCT IEYIKK
101: CYQTTLLEYS KRFKVPGFRP GKIVPENVLL NYVGPQHVRA ATVEAILRHT LPQALSSVEE RALEDSVRIL TKFDDMNEAF SLDHVFRYDV AVDVVPEVRW
201: LSEDKYKNLK VVIEIDEIVD AEKAAELELK RRRKSLGLLR IVPDRGLQVG DLVVLDILAE TITTDGSKGE KIPSAESTGF HLDTEENTNL VPGFLGSLIG
301: IRPGETRTFP IQFPESFEQE TLQGVRAQFT VVCKELFFRE LPELDDLLAA KLLPGCNTID EVKERILERC KEVEKTAIEQ ATDNAILDQL GKLVDVDVPR
401: SLFQEQGQQL YGAKLLQLQA ERKLDKDQLA SLSSEKSVQE YLKGERENIT RIIKQMLVVG EIFKAENLQY STDQLVKEVE NSIEEFKRYN QDYDEGNIKQ
501: QVQDVLEAAK VLEWLKENCT IEYIKK
001: MELCVISTTT TVKAINPFLP SITRRVSSRL FQSDSVLQFG GRLKKPISRP LDMSCVSRKI GFFGDFMSHG GNFRLFAAAS PAVETSVKED KLPADLKVTE
101: TVQANSSVKL SVEVPEIVCE DCYQRVLTEF MKLSKVPGFR PKTRVPENII VGFVGRQYVL RATVESILKR TLPHAMESVT GRALKDSIQI VSSFPDMEKA
201: YSKLKTLSYE VVVDVVPELK WNPEDGYKNM KVVVELGDEI DAKKACERQL RQKYKSLGAL KIVTERGLQV GDLAVVDISA TTIDEDGSTG QAIPDAESKG
301: FHFDTEEGNR LLPGFLDAII GIRAGESKSF TLVFPESWKQ ESLRGQRAQF TVDCKELFYR DLPTLDDSLA DKLLPGCTTL KEVEETLAKR CQEMEQEAKE
401: QATDNAILEQ IRKMVEVEIP QSLFEEQGRQ FYGARLLEIQ GNMKLNEDQL ASLSSQKAVN EFLETQRESI TNIIKQNIAV GDIFKRENLE FSTDELVKEV
501: ENSISEFKKH KQEFDEERVK DQVQEILEGA KVLEWLKDRA EIQYITR
101: TVQANSSVKL SVEVPEIVCE DCYQRVLTEF MKLSKVPGFR PKTRVPENII VGFVGRQYVL RATVESILKR TLPHAMESVT GRALKDSIQI VSSFPDMEKA
201: YSKLKTLSYE VVVDVVPELK WNPEDGYKNM KVVVELGDEI DAKKACERQL RQKYKSLGAL KIVTERGLQV GDLAVVDISA TTIDEDGSTG QAIPDAESKG
301: FHFDTEEGNR LLPGFLDAII GIRAGESKSF TLVFPESWKQ ESLRGQRAQF TVDCKELFYR DLPTLDDSLA DKLLPGCTTL KEVEETLAKR CQEMEQEAKE
401: QATDNAILEQ IRKMVEVEIP QSLFEEQGRQ FYGARLLEIQ GNMKLNEDQL ASLSSQKAVN EFLETQRESI TNIIKQNIAV GDIFKRENLE FSTDELVKEV
501: ENSISEFKKH KQEFDEERVK DQVQEILEGA KVLEWLKDRA EIQYITR
Arabidopsis Description
TIGTrigger factor-like protein TIG, Chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.