Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 2
- plastid 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G177700.1 | Wheat | cytosol, plastid | 100.0 | 100.0 |
| TraesCS7D01G179100.1 | Wheat | plastid | 91.2 | 91.63 |
| TraesCS7A01G236700.1 | Wheat | plastid | 88.43 | 90.09 |
| TraesCS7A01G177600.1 | Wheat | plastid | 87.96 | 88.37 |
| TraesCS7A01G232500.1 | Wheat | plastid | 81.94 | 85.92 |
| HORVU7Hr1G036500.7 | Barley | plastid | 75.46 | 79.9 |
| TraesCS7A01G177800.1 | Wheat | nucleus | 80.09 | 75.22 |
| HORVU7Hr1G036470.3 | Barley | cytosol, nucleus | 80.56 | 71.9 |
| HORVU7Hr1G036570.2 | Barley | cytosol | 73.15 | 71.49 |
| HORVU7Hr1G036540.3 | Barley | mitochondrion, nucleus, plastid | 83.33 | 69.77 |
| TraesCS6A01G316200.1 | Wheat | mitochondrion | 45.83 | 46.05 |
| EER89430 | Sorghum | plastid | 44.44 | 42.29 |
| KRH39841 | Soybean | mitochondrion | 28.7 | 42.18 |
| OQU76071 | Sorghum | plastid | 39.35 | 42.08 |
| TraesCS5B01G123900.1 | Wheat | plastid | 46.3 | 41.84 |
| Solyc08g078700.2.1 | Tomato | plastid | 39.35 | 40.48 |
| PGSC0003DMT400012249 | Potato | mitochondrion | 39.35 | 40.28 |
| KRH23958 | Soybean | mitochondrion | 38.89 | 39.62 |
| Zm00001d044874_P001 | Maize | cytosol, plastid | 37.96 | 39.42 |
| OQU75612 | Sorghum | plastid | 40.28 | 39.01 |
| OQU75930 | Sorghum | plastid | 40.28 | 39.01 |
| VIT_02s0154g00480.t01 | Wine grape | mitochondrion, plastid | 35.19 | 37.81 |
| VIT_02s0154g00490.t01 | Wine grape | mitochondrion | 34.26 | 36.82 |
| AT5G51440.1 | Thale cress | mitochondrion | 35.65 | 36.67 |
| AT4G25200.1 | Thale cress | mitochondrion | 35.65 | 36.67 |
| VIT_16s0022g00510.t01 | Wine grape | mitochondrion | 35.19 | 36.54 |
| EER89431 | Sorghum | plastid | 36.57 | 36.41 |
| CDY38862 | Canola | mitochondrion | 32.87 | 36.22 |
| Bra029174.1-P | Field mustard | mitochondrion | 32.87 | 36.04 |
| CDY00476 | Canola | mitochondrion | 26.85 | 36.02 |
| Bra013872.1-P | Field mustard | mitochondrion | 35.19 | 35.68 |
| CDX89437 | Canola | mitochondrion | 35.19 | 35.68 |
| GSMUA_Achr10P... | Banana | mitochondrion | 35.65 | 35.65 |
| CDY03368 | Canola | mitochondrion | 34.26 | 34.74 |
| CDY32630 | Canola | mitochondrion | 26.39 | 33.53 |
| CDX99920 | Canola | mitochondrion | 24.54 | 33.12 |
| Bra028253.1-P | Field mustard | mitochondrion | 24.07 | 32.3 |
| KXG19616 | Sorghum | plastid | 37.04 | 29.74 |
| Os06t0219500-00 | Rice | mitochondrion | 42.13 | 29.45 |
| Solyc08g078710.1.1 | Tomato | mitochondrion | 21.3 | 23.47 |
| PGSC0003DMT400012247 | Potato | mitochondrion | 20.83 | 23.08 |
| PGSC0003DMT400012246 | Potato | plastid | 14.35 | 18.24 |
| Solyc08g078720.2.1 | Tomato | mitochondrion | 13.43 | 17.26 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G177500.1 | EnsemblPlantsGene:TraesCS7A01G177500 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20 | InterPro:HSP20-like_chaperone |
| InterPro:IPR002068 | InterPro:IPR008978 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF176 | PFAM:PF00011 | PFscan:PS01031 |
| SEG:seg | SUPFAM:SSF49764 | TIGR:cd06464 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr7A:+:130782557..130783322
Molecular Weight (calculated)
23637.9 Da
IEP (calculated)
5.029
GRAVY (calculated)
-0.470
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAVDCKGK EIAPASLLKS GAPVAFRSVH SPAVTAARRP YNTQAKEVSR YDDDDDDYSG RDLVIPSFFS QDVIDPLGAP TSMARLLSLM EDVASQTGGL
101: SSTAGAGASR LGRWVAKEDD DAVYLKVPMP GLTKEHVEVR ADKNILVIKG EGEKQPWDGD DDDSAVPKYN RRIEVPSADA YKMDKIKAEM KNGVLWVTLL
201: KVKEEERKDV FHVKVE
101: SSTAGAGASR LGRWVAKEDD DAVYLKVPMP GLTKEHVEVR ADKNILVIKG EGEKQPWDGD DDDSAVPKYN RRIEVPSADA YKMDKIKAEM KNGVLWVTLL
201: KVKEEERKDV FHVKVE
001: MASALALKRL LSSSIAPRSR SVLRPAVSSR LFNTNAVRSY DDDGENGDGV DLYRRSVPRR RGDFFSDVFD PFSPTRSVSQ VLNLMDQFME NPLLSATRGM
101: GASGARRGWD IKEKDDALYL RIDMPGLSRE DVKLALEQDT LVIRGEGKNE EDGGEEGESG NRRFTSRIGL PDKIYKIDEI KAEMKNGVLK VVIPKMKEQE
201: RNDVRQIEIN
101: GASGARRGWD IKEKDDALYL RIDMPGLSRE DVKLALEQDT LVIRGEGKNE EDGGEEGESG NRRFTSRIGL PDKIYKIDEI KAEMKNGVLK VVIPKMKEQE
201: RNDVRQIEIN
Arabidopsis Description
HSP23.6HSP23.6-MITO [Source:UniProtKB/TrEMBL;Acc:A0A178USN5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.