Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G351400.1 | Wheat | cytosol | 84.56 | 92.65 |
| HORVU1Hr1G076310.1 | Barley | nucleus | 51.01 | 50.0 |
| Os05t0518800-00 | Rice | cytosol, mitochondrion, nucleus | 40.27 | 46.15 |
| KRH13257 | Soybean | mitochondrion | 14.77 | 44.9 |
| GSMUA_Achr7P24930_001 | Banana | plastid | 28.19 | 42.0 |
| GSMUA_Achr3P31830_001 | Banana | nucleus | 31.54 | 39.83 |
| GSMUA_Achr9P05750_001 | Banana | cytosol | 31.54 | 39.17 |
| TraesCS3D01G283600.1 | Wheat | cytosol, plastid | 24.83 | 38.14 |
| AT4G18980.1 | Thale cress | cytosol | 24.83 | 34.91 |
| CDX78911 | Canola | nucleus | 24.16 | 34.29 |
| CDX99403 | Canola | nucleus | 25.5 | 34.23 |
| CDX99846 | Canola | cytosol | 31.54 | 34.06 |
| CDY35299 | Canola | nucleus | 30.87 | 33.58 |
| CDY26321 | Canola | nucleus | 30.87 | 33.33 |
| CDX94683 | Canola | cytosol | 30.2 | 33.09 |
| AT1G29640.1 | Thale cress | cytosol | 30.87 | 32.86 |
| CDX94684 | Canola | cytosol | 29.53 | 32.35 |
| CDY68974 | Canola | nucleus | 29.53 | 32.35 |
| Bra030154.1-P | Field mustard | nucleus | 29.53 | 32.35 |
| CDX84328 | Canola | cytosol | 27.52 | 32.28 |
| KRH21137 | Soybean | cytosol | 25.5 | 32.2 |
| CDX90198 | Canola | cytosol | 30.2 | 32.14 |
| CDX76503 | Canola | nucleus | 23.49 | 31.82 |
| Bra020981.1-P | Field mustard | nucleus | 23.49 | 31.82 |
| TraesCS1A01G351000.1 | Wheat | nucleus | 28.86 | 31.62 |
| Bra017599.1-P | Field mustard | cytosol | 24.16 | 31.58 |
| CDY72609 | Canola | cytosol | 24.16 | 31.58 |
| CDY17236 | Canola | cytosol | 26.85 | 31.5 |
| Bra005436.1-P | Field mustard | cytosol | 26.85 | 31.5 |
| Bra013366.1-P | Field mustard | nucleus | 24.16 | 31.3 |
| CDX98601 | Canola | cytosol | 22.82 | 31.19 |
| Bra012560.1-P | Field mustard | cytosol | 22.82 | 31.19 |
| CDY09268 | Canola | nucleus | 22.82 | 30.91 |
| AT2G34340.1 | Thale cress | nucleus | 28.19 | 30.88 |
| Zm00001d038814_P001 | Maize | cytosol, nucleus, plastid | 30.87 | 30.67 |
| CDY72186 | Canola | cytosol | 28.86 | 30.28 |
| CDY43682 | Canola | cytosol | 28.86 | 30.28 |
| AT5G45630.1 | Thale cress | nucleus | 22.82 | 29.82 |
| Bra010823.1-P | Field mustard | nucleus | 26.85 | 29.2 |
| CDY01576 | Canola | nucleus | 21.48 | 29.09 |
| KXG22361 | Sorghum | nucleus | 30.87 | 28.05 |
| PGSC0003DMT400035020 | Potato | nucleus | 26.17 | 27.86 |
| KRH71505 | Soybean | cytosol | 18.12 | 27.27 |
| PGSC0003DMT400035019 | Potato | nucleus | 25.5 | 27.14 |
| Solyc03g005890.1.1 | Tomato | nucleus | 24.16 | 26.09 |
| KRH11111 | Soybean | nucleus | 25.5 | 21.97 |
| Bra032329.1-P | Field mustard | nucleus | 28.19 | 20.39 |
| Bra021903.1-P | Field mustard | nucleus | 19.46 | 13.36 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G339100.1 | EnsemblPlantsGene:TraesCS1A01G339100 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF20 | PFAM:PF04520 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:529126241..529126690
Molecular Weight (calculated)
16597.8 Da
IEP (calculated)
7.564
GRAVY (calculated)
-0.477
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEFDEADVL WPDHDDDEEP VQVQDLQQQQ RVSPAIKPHD KIEAARRPAG SSSAPMVIPV APRFPMMMDY GSWARRCHSD GVGGASFVAP HVITARRRCA
101: SSEERSVCVG QGRTLKGRDL LYVRTAVLRM TGFLETRGPS IHRVTTVRA
101: SSEERSVCVG QGRTLKGRDL LYVRTAVLRM TGFLETRGPS IHRVTTVRA
001: MSEEFDESEI IFSDNYFPIR RREDGNEKEN NRPVDFRENS ERVWNKSSRR SKTTPLPSAV TAFSSSLPVN IPMRRYSTEE EYSDDDGGRK MIPPHLIVGR
101: RMEGGQMAFS VCTGNGRTLK GRDLSRVRNS VLKLTGFLEA
101: RMEGGQMAFS VCTGNGRTLK GRDLSRVRNS VLKLTGFLEA
Arabidopsis Description
At1g29640 [Source:UniProtKB/TrEMBL;Acc:Q9C7N7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.