Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98601 | Canola | cytosol | 100.0 | 100.0 |
| Bra013366.1-P | Field mustard | nucleus | 74.31 | 70.43 |
| AT4G18980.1 | Thale cress | cytosol | 67.89 | 69.81 |
| Bra020981.1-P | Field mustard | nucleus | 66.06 | 65.45 |
| Bra017599.1-P | Field mustard | cytosol | 45.87 | 43.86 |
| GSMUA_Achr6P26140_001 | Banana | cytosol | 39.45 | 42.16 |
| TraesCS3D01G283600.1 | Wheat | cytosol, plastid | 35.78 | 40.21 |
| GSMUA_Achr7P24930_001 | Banana | plastid | 34.86 | 38.0 |
| GSMUA_Achr4P15500_001 | Banana | cytosol | 40.37 | 37.93 |
| Bra005436.1-P | Field mustard | cytosol | 44.04 | 37.8 |
| Zm00001d043586_P001 | Maize | cytosol, plastid | 32.11 | 37.23 |
| Bra030154.1-P | Field mustard | nucleus | 44.95 | 36.03 |
| GSMUA_Achr3P31830_001 | Banana | nucleus | 38.53 | 35.59 |
| Zm00001d011752_P001 | Maize | cytosol | 29.36 | 35.56 |
| Bra010823.1-P | Field mustard | nucleus | 43.12 | 34.31 |
| GSMUA_Achr2P09490_001 | Banana | cytosol | 37.61 | 34.17 |
| GSMUA_Achr9P05750_001 | Banana | cytosol | 37.61 | 34.17 |
| Os01t0727700-00 | Rice | cytosol | 33.95 | 33.95 |
| GSMUA_Achr7P24940_001 | Banana | cytosol | 37.61 | 33.88 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.03 | 31.86 |
| GSMUA_Achr9P05760_001 | Banana | nucleus | 33.95 | 29.84 |
| Os05t0518800-00 | Rice | cytosol, mitochondrion, nucleus | 33.95 | 28.46 |
| GSMUA_Achr1P11590_001 | Banana | cytosol | 27.52 | 26.09 |
| KXG33366 | Sorghum | cytosol | 34.86 | 25.85 |
| TraesCS1B01G365200.1 | Wheat | nucleus | 32.11 | 25.18 |
| TraesCS1A01G351000.1 | Wheat | nucleus | 31.19 | 25.0 |
| Bra032329.1-P | Field mustard | nucleus | 46.79 | 24.76 |
| TraesCS1B01G351400.1 | Wheat | cytosol | 29.36 | 23.53 |
| Zm00001d010814_P001 | Maize | cytosol | 29.36 | 23.19 |
| TraesCS1A01G339100.1 | Wheat | cytosol | 31.19 | 22.82 |
| Zm00001d043455_P001 | Maize | cytosol | 31.19 | 22.67 |
| Os01t0748300-00 | Rice | cytosol | 31.19 | 21.94 |
| Os05t0531100-01 | Rice | nucleus | 28.44 | 21.83 |
| EES18553 | Sorghum | cytosol | 32.11 | 21.47 |
| HORVU1Hr1G076310.1 | Barley | nucleus | 29.36 | 21.05 |
| Zm00001d038814_P001 | Maize | cytosol, nucleus, plastid | 28.44 | 20.67 |
| KXG22361 | Sorghum | nucleus | 28.44 | 18.9 |
| Bra021903.1-P | Field mustard | nucleus | 31.19 | 15.67 |
Protein Annotations
| EnsemblPlants:Bra012560.1 | EnsemblPlants:Bra012560.1-P | EnsemblPlantsGene:Bra012560 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF7 |
| PFAM:PF04520 | SEG:seg | UniParc:UPI00025403D9 | UniProt:M4D7V0 | MapMan:35.2 | : |
Description
AT4G18980 (E=2e-032) | unknown protein
Coordinates
chrA03:+:23547557..23547886
Molecular Weight (calculated)
12760.1 Da
IEP (calculated)
6.543
GRAVY (calculated)
-0.933
Length
109 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEELQESEV IFSDEYYTRN KNKSSIDENN KTKTTAMEKK SSPVRIPSRS IFRRAEEEEE EEGEITPPHI IIGKRRMEAQ MAFSFCTLKG RELSRHRNSV
101: LRMTGFLEV
101: LRMTGFLEV
001: MSEEFQESEV IFSDESFTRK DNKISHNNEN YERKSTEKDK ISSPVRIPSR TTIRYTEEEG EMTPPHVIIE KRRTEAQMAF SFCTLKGRDL SRHRNTVLRM
101: TGFLEV
101: TGFLEV
Arabidopsis Description
AtS40-3AtS40-3 [Source:UniProtKB/TrEMBL;Acc:A0A178UY13]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.