Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G339100.1 | Wheat | cytosol | 92.65 | 84.56 |
| HORVU1Hr1G076310.1 | Barley | nucleus | 55.88 | 50.0 |
| Os05t0518800-00 | Rice | cytosol, mitochondrion, nucleus | 44.85 | 46.92 |
| KRH13257 | Soybean | mitochondrion | 15.44 | 42.86 |
| GSMUA_Achr7P24930_001 | Banana | plastid | 30.15 | 41.0 |
| GSMUA_Achr3P31830_001 | Banana | nucleus | 35.29 | 40.68 |
| GSMUA_Achr9P05750_001 | Banana | cytosol | 33.82 | 38.33 |
| TraesCS3D01G283600.1 | Wheat | cytosol, plastid | 26.47 | 37.11 |
| AT4G18980.1 | Thale cress | cytosol | 26.47 | 33.96 |
| CDY26321 | Canola | nucleus | 33.82 | 33.33 |
| CDX99403 | Canola | nucleus | 27.21 | 33.33 |
| CDX78911 | Canola | nucleus | 25.74 | 33.33 |
| CDY35299 | Canola | nucleus | 33.09 | 32.85 |
| CDX99846 | Canola | cytosol | 33.09 | 32.61 |
| AT2G34340.1 | Thale cress | nucleus | 32.35 | 32.35 |
| CDX94683 | Canola | cytosol | 32.35 | 32.35 |
| AT1G29640.1 | Thale cress | cytosol | 33.09 | 32.14 |
| TraesCS1B01G365200.1 | Wheat | nucleus | 32.35 | 31.65 |
| CDX94684 | Canola | cytosol | 31.62 | 31.62 |
| CDY68974 | Canola | nucleus | 31.62 | 31.62 |
| Bra030154.1-P | Field mustard | nucleus | 31.62 | 31.62 |
| CDX84328 | Canola | cytosol | 29.41 | 31.5 |
| CDX90198 | Canola | cytosol | 32.35 | 31.43 |
| KRH21137 | Soybean | cytosol | 27.21 | 31.36 |
| CDY17236 | Canola | cytosol | 28.68 | 30.71 |
| Bra005436.1-P | Field mustard | cytosol | 28.68 | 30.71 |
| Bra017599.1-P | Field mustard | cytosol | 25.74 | 30.7 |
| CDY72609 | Canola | cytosol | 25.74 | 30.7 |
| Bra013366.1-P | Field mustard | nucleus | 25.74 | 30.43 |
| Zm00001d038814_P001 | Maize | cytosol, nucleus, plastid | 33.09 | 30.0 |
| CDY72186 | Canola | cytosol | 30.88 | 29.58 |
| CDY43682 | Canola | cytosol | 30.88 | 29.58 |
| Bra012560.1-P | Field mustard | cytosol | 23.53 | 29.36 |
| CDX98601 | Canola | cytosol | 23.53 | 29.36 |
| CDX76503 | Canola | nucleus | 23.53 | 29.09 |
| CDY09268 | Canola | nucleus | 23.53 | 29.09 |
| Bra020981.1-P | Field mustard | nucleus | 23.53 | 29.09 |
| KXG22361 | Sorghum | nucleus | 34.56 | 28.66 |
| Bra010823.1-P | Field mustard | nucleus | 28.68 | 28.47 |
| AT5G45630.1 | Thale cress | nucleus | 23.53 | 28.07 |
| PGSC0003DMT400035020 | Potato | nucleus | 28.68 | 27.86 |
| CDY01576 | Canola | nucleus | 22.06 | 27.27 |
| PGSC0003DMT400035019 | Potato | nucleus | 27.94 | 27.14 |
| KRH71505 | Soybean | cytosol | 19.12 | 26.26 |
| Solyc03g005890.1.1 | Tomato | nucleus | 26.47 | 26.09 |
| KRH11111 | Soybean | nucleus | 26.47 | 20.81 |
| Bra032329.1-P | Field mustard | nucleus | 30.88 | 20.39 |
| Bra021903.1-P | Field mustard | nucleus | 19.85 | 12.44 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G351400.1 | EnsemblPlantsGene:TraesCS1B01G351400 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF20 | PFAM:PF04520 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr1B:-:582021703..582022307
Molecular Weight (calculated)
15294.2 Da
IEP (calculated)
7.128
GRAVY (calculated)
-0.601
Length
136 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEFDEADVL WPDHHEDEEP VQVQDRQQQQ RVSPAIKPND KIDAARRPAG SSSAPMVIPV VPRHPMMMDH GSWARRCHSD GVGGASFVAP HVMTARRRCA
101: YSEERSVCVG QGRTLKGRDL LYVRTAVLRM TGFLET
101: YSEERSVCVG QGRTLKGRDL LYVRTAVLRM TGFLET
001: MAEEFDESEV VFSDGLSSVL HKENENRLFG SDMERKKTRR IKRTTTEKAS LSSSLPVSIP ENIFRRYVGK EEDEYSEEEY SEGGGEMIPP HIMIGRRIQG
101: GQMAFSVCSG SGRTLKGRDL SRVRNSVLRL TGFLEA
101: GQMAFSVCSG SGRTLKGRDL SRVRNSVLRL TGFLEA
Arabidopsis Description
At2g34340 [Source:UniProtKB/TrEMBL;Acc:O80783]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.