Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012560.1-P | Field mustard | cytosol | 69.81 | 67.89 |
| CDX98601 | Canola | cytosol | 69.81 | 67.89 |
| CDX78911 | Canola | nucleus | 66.04 | 66.67 |
| CDY01576 | Canola | nucleus | 68.87 | 66.36 |
| CDX99403 | Canola | nucleus | 65.09 | 62.16 |
| Bra013366.1-P | Field mustard | nucleus | 66.98 | 61.74 |
| Bra020981.1-P | Field mustard | nucleus | 63.21 | 60.91 |
| CDX76503 | Canola | nucleus | 63.21 | 60.91 |
| CDY09268 | Canola | nucleus | 63.21 | 60.91 |
| AT5G45630.1 | Thale cress | nucleus | 56.6 | 52.63 |
| GSMUA_Achr6P26140_001 | Banana | cytosol | 41.51 | 43.14 |
| GSMUA_Achr4P15500_001 | Banana | cytosol | 42.45 | 38.79 |
| AT2G34340.1 | Thale cress | nucleus | 48.11 | 37.5 |
| GSMUA_Achr7P24930_001 | Banana | plastid | 34.91 | 37.0 |
| AT1G29640.1 | Thale cress | cytosol | 48.11 | 36.43 |
| TraesCS3D01G283600.1 | Wheat | cytosol, plastid | 33.02 | 36.08 |
| GSMUA_Achr3P31830_001 | Banana | nucleus | 39.62 | 35.59 |
| Zm00001d011752_P001 | Maize | cytosol | 30.19 | 35.56 |
| GSMUA_Achr9P05750_001 | Banana | cytosol | 38.68 | 34.17 |
| Zm00001d043586_P001 | Maize | cytosol, plastid | 30.19 | 34.04 |
| GSMUA_Achr2P09490_001 | Banana | cytosol | 37.74 | 33.33 |
| Os01t0727700-00 | Rice | cytosol | 33.96 | 33.03 |
| GSMUA_AchrUn_... | Banana | nucleus | 34.91 | 32.74 |
| GSMUA_Achr7P24940_001 | Banana | cytosol | 36.79 | 32.23 |
| Os05t0518800-00 | Rice | cytosol, mitochondrion, nucleus | 37.74 | 30.77 |
| GSMUA_Achr9P05760_001 | Banana | nucleus | 35.85 | 30.65 |
| GSMUA_Achr1P11590_001 | Banana | cytosol | 32.08 | 29.57 |
| KXG33366 | Sorghum | cytosol | 39.62 | 28.57 |
| TraesCS1B01G365200.1 | Wheat | nucleus | 34.91 | 26.62 |
| TraesCS1A01G351000.1 | Wheat | nucleus | 33.96 | 26.47 |
| TraesCS1B01G351400.1 | Wheat | cytosol | 33.96 | 26.47 |
| TraesCS1A01G339100.1 | Wheat | cytosol | 34.91 | 24.83 |
| Zm00001d043455_P001 | Maize | cytosol | 34.91 | 24.67 |
| Os05t0531100-01 | Rice | nucleus | 33.02 | 24.65 |
| Zm00001d010814_P001 | Maize | cytosol | 32.08 | 24.64 |
| Os01t0748300-00 | Rice | cytosol | 35.85 | 24.52 |
| EES18553 | Sorghum | cytosol | 34.91 | 22.7 |
| Zm00001d038814_P001 | Maize | cytosol, nucleus, plastid | 32.08 | 22.67 |
| HORVU1Hr1G076310.1 | Barley | nucleus | 32.08 | 22.37 |
| KXG22361 | Sorghum | nucleus | 30.19 | 19.51 |
Protein Annotations
| MapMan:35.2 | EntrezGene:827634 | UniProt:A0A178UY13 | ProteinID:AEE84119.1 | EMBL:AK118401 | ArrayExpress:AT4G18980 |
| EnsemblPlantsGene:AT4G18980 | RefSeq:AT4G18980 | TAIR:AT4G18980 | RefSeq:AT4G18980-TAIR-G | EnsemblPlants:AT4G18980.1 | TAIR:AT4G18980.1 |
| Symbol:AtS40-3 | EMBL:BT004703 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0010150 | GO:GO:0010468 | RefSeq:NP_193633.2 |
| ProteinID:OAO98788.1 | PFAM:PF04520 | PO:PO:0000293 | PO:PO:0007616 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009047 | PO:PO:0025281 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF7 | UniProt:Q8GX72 |
| InterPro:Senescence_reg_S40 | UniParc:UPI000000C439 | : | : | : | : |
Description
AtS40-3AtS40-3 [Source:UniProtKB/TrEMBL;Acc:A0A178UY13]
Coordinates
chr4:+:10398857..10399905
Molecular Weight (calculated)
12517.7 Da
IEP (calculated)
6.800
GRAVY (calculated)
-0.992
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEEFQESEV IFSDESFTRK DNKISHNNEN YERKSTEKDK ISSPVRIPSR TTIRYTEEEG EMTPPHVIIE KRRTEAQMAF SFCTLKGRDL SRHRNTVLRM
101: TGFLEV
101: TGFLEV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.