Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P26140_001 | Banana | cytosol | 59.68 | 72.55 |
| KRH13257 | Soybean | mitochondrion | 24.19 | 61.22 |
| GSMUA_Achr2P09490_001 | Banana | cytosol | 56.45 | 58.33 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.97 | 50.44 |
| GSMUA_Achr7P24940_001 | Banana | cytosol | 49.19 | 50.41 |
| GSMUA_Achr4P15500_001 | Banana | cytosol | 45.97 | 49.14 |
| GSMUA_Achr1P11590_001 | Banana | cytosol | 43.55 | 46.96 |
| GSMUA_Achr7P24930_001 | Banana | plastid | 37.1 | 46.0 |
| CDY26321 | Canola | nucleus | 45.16 | 40.58 |
| CDX99846 | Canola | cytosol | 45.16 | 40.58 |
| KRH71505 | Soybean | cytosol | 32.26 | 40.4 |
| GSMUA_Achr3P31830_001 | Banana | nucleus | 37.9 | 39.83 |
| CDY68974 | Canola | nucleus | 41.94 | 38.24 |
| CDX94683 | Canola | cytosol | 41.94 | 38.24 |
| CDX94684 | Canola | cytosol | 41.94 | 38.24 |
| KRH21137 | Soybean | cytosol | 36.29 | 38.14 |
| Bra030154.1-P | Field mustard | nucleus | 41.13 | 37.5 |
| CDX78911 | Canola | nucleus | 31.45 | 37.14 |
| CDX99403 | Canola | nucleus | 33.06 | 36.94 |
| GSMUA_Achr9P05750_001 | Banana | cytosol | 35.48 | 36.67 |
| CDY35299 | Canola | nucleus | 40.32 | 36.5 |
| CDX84328 | Canola | cytosol | 37.1 | 36.22 |
| CDY17236 | Canola | cytosol | 37.1 | 36.22 |
| Bra005436.1-P | Field mustard | cytosol | 37.1 | 36.22 |
| AT4G18980.1 | Thale cress | cytosol | 30.65 | 35.85 |
| AT1G29640.1 | Thale cress | cytosol | 40.32 | 35.71 |
| AT5G45630.1 | Thale cress | nucleus | 32.26 | 35.09 |
| CDX90198 | Canola | cytosol | 39.52 | 35.0 |
| PGSC0003DMT400035020 | Potato | nucleus | 38.71 | 34.29 |
| CDY72609 | Canola | cytosol | 31.45 | 34.21 |
| Bra017599.1-P | Field mustard | cytosol | 31.45 | 34.21 |
| CDX98601 | Canola | cytosol | 29.84 | 33.95 |
| Bra012560.1-P | Field mustard | cytosol | 29.84 | 33.95 |
| Bra013366.1-P | Field mustard | nucleus | 31.45 | 33.91 |
| Bra020981.1-P | Field mustard | nucleus | 29.84 | 33.64 |
| CDX76503 | Canola | nucleus | 29.84 | 33.64 |
| PGSC0003DMT400035019 | Potato | nucleus | 37.9 | 33.57 |
| CDY72186 | Canola | cytosol | 37.9 | 33.1 |
| CDY43682 | Canola | cytosol | 37.9 | 33.1 |
| CDY09268 | Canola | nucleus | 29.03 | 32.73 |
| AT2G34340.1 | Thale cress | nucleus | 35.48 | 32.35 |
| Bra010823.1-P | Field mustard | nucleus | 35.48 | 32.12 |
| CDY01576 | Canola | nucleus | 27.42 | 30.91 |
| Solyc03g005890.1.1 | Tomato | nucleus | 33.06 | 29.71 |
| KRH11111 | Soybean | nucleus | 36.29 | 26.01 |
| Bra032329.1-P | Field mustard | nucleus | 40.32 | 24.27 |
| Bra021903.1-P | Field mustard | nucleus | 22.58 | 12.9 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P05760_001 | EnsemblPlants:GSMUA_Achr9T05760_001 | EnsemblPlantsGene:GSMUA_Achr9G05760_001 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF7 |
| PFAM:PF04520 | SEG:seg | UniParc:UPI0002965F0F | UniProt:M0TXT5 | MapMan:35.2 | : |
Description
DUF584 domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G05760_001]
Coordinates
chr9:+:3684261..3684635
Molecular Weight (calculated)
14200.4 Da
IEP (calculated)
4.835
GRAVY (calculated)
-0.945
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEFEEADIL WPDYDRDEDE LTEEWHAGLG TRRRTSSPVE IPSRPQPVRS WTLGFASSDR VQGDDDDKDD GGQTHNVPPH VMVTRRIADK TSFSVCVGNG
101: RTLKGRDLRQ VRNSILRMTG FLER
101: RTLKGRDLRQ VRNSILRMTG FLER
001: MSEEFQESDI IFSDQSKIST SSRYTKLYNS RNDEKKGTRR HETAEKTSPV RIPTNNFRCL EWDTTEEEDD KTPPHVIIER RMKEQIAFSA CTLKGRDLSR
101: HRNSVLRMTG FLEA
101: HRNSVLRMTG FLEA
Arabidopsis Description
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q9FK78]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.