Factsheet for GSMUA_Achr2P12040_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 1
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P13230_001
GSMUA_Achr1P15680_001
GSMUA_Achr1P19060_001
GSMUA_Achr1P19920_001
GSMUA_Achr2P22730_001
GSMUA_Achr3P11230_001
GSMUA_Achr3P18710_001
GSMUA_Achr4P00500_001
GSMUA_Achr4P04340_001
GSMUA_Achr4P09860_001
GSMUA_Achr4P32570_001
GSMUA_Achr5P01400_001
GSMUA_Achr6P02720_001
GSMUA_Achr6P06320_001
GSMUA_Achr6P09710_001
GSMUA_Achr6P18470_001
GSMUA_Achr6P20490_001
GSMUA_Achr6P23860_001
GSMUA_Achr6P24690_001
GSMUA_Achr6P25720_001
GSMUA_Achr7P11350_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P20990_001
GSMUA_Achr7P23550_001
GSMUA_Achr8P18400_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17680.1	GSMUA_Achr11P...	AT1G22840.1	21798944
AT4G17680.1	GSMUA_Achr5P01400_001	AT1G22840.1	21798944
AT4G17680.1	GSMUA_Achr6P18470_001	AT1G22840.1	21798944
AT4G17680.1	GSMUA_Achr7P23550_001	AT1G22840.1	21798944
AT4G17680.1	GSMUA_Achr4P32570_001	AT1G49850.1	21798944
AT4G17680.1	GSMUA_Achr6P24690_001	AT1G49850.1	21798944
AT4G17680.1	GSMUA_Achr1P15680_001	AT1G67170.1	21798944
AT4G17680.1	GSMUA_Achr1P19060_001	AT1G67170.1	21798944
AT4G17680.1	GSMUA_Achr1P13230_001	AT1G76760.1	21798944
AT4G17680.1	GSMUA_Achr6P25720_001	AT1G76760.1	21798944
AT4G17680.1	GSMUA_Achr6P06320_001	AT2G32840.1	21798944
AT4G17680.1	GSMUA_Achr7P11350_001	AT2G32840.1	21798944
AT4G17680.1	GSMUA_Achr10P...	AT3G10970.1	21798944
AT4G17680.1	GSMUA_Achr4P09860_001	AT3G12930.1	21798944
AT4G17680.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT4G17680.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT4G17680.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT4G17680.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944
AT4G17680.1	GSMUA_Achr1P19920_001	AT3G51180.1	21798944
AT4G17680.1	GSMUA_Achr3P11230_001	AT3G51180.1	21798944
AT4G17680.1	GSMUA_Achr4P04340_001	AT3G54826.1	21798944
AT4G17680.1	GSMUA_AchrUn_...	AT4G32190.1	21798944
AT4G17680.1	GSMUA_Achr11P...	AT4G32295.1	21798944
AT4G17680.1	GSMUA_Achr6P20490_001	AT4G32295.1	21798944
AT4G17680.1	GSMUA_Achr10P...	AT5G14070.1	21798944
AT4G17680.1	GSMUA_Achr3P18710_001	AT5G14070.1	21798944
AT4G17680.1	GSMUA_Achr6P23860_001	AT5G14070.1	21798944
AT4G17680.1	GSMUA_AchrUn_...	AT5G14070.1	21798944
AT4G17680.1	GSMUA_Achr10P...	AT5G38420.1	21798944
AT4G17680.1	GSMUA_Achr2P22730_001	AT5G38420.1	21798944
AT4G17680.1	GSMUA_Achr6P09710_001	AT5G38420.1	21798944
AT4G17680.1	GSMUA_Achr8P18400_001	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P00560_001	Banana	nucleus	57.25	53.29
GSMUA_Achr4P21690_001	Banana	nucleus	63.2	52.47
GSMUA_Achr4P30100_001	Banana	plastid	55.39	48.85
GSMUA_Achr8P14860_001	Banana	nucleus	59.48	47.48
GSMUA_Achr2P18250_001	Banana	nucleus	56.88	46.36
Bra024967.1-P	Field mustard	plastid	37.55	40.89
HORVU1Hr1G054930.3	Barley	cytosol	47.21	38.72
TraesCS1D01G217800.1	Wheat	cytosol	46.1	38.63
TraesCS1A01G215300.1	Wheat	cytosol	46.1	38.27
CDY09609	Canola	cytosol	34.94	38.06
Os02t0687500-01	Rice	cytosol, nucleus, plastid	44.98	38.05
TraesCS1B01G228800.1	Wheat	cytosol	45.72	37.73
Zm00001d047069_P001	Maize	cytosol	45.72	37.05
KRH77271	Soybean	plastid	44.24	36.96
Zm00001d029988_P001	Maize	cytosol, mitochondrion, nucleus	46.1	36.9
Os10t0565500-01	Rice	nucleus	47.96	36.75
Zm00001d017649_P001	Maize	plastid	44.98	36.56
VIT_02s0012g00290.t01	Wine grape	cytosol, nucleus, plastid	45.35	36.2
KRH28216	Soybean	nucleus	44.24	36.17
TraesCS6D01G243000.1	Wheat	cytosol	43.87	35.33
TraesCS6B01G289500.1	Wheat	nucleus	44.24	35.21
KXG38894	Sorghum	cytosol, mitochondrion, nucleus	45.35	35.06
HORVU6Hr1G066640.4	Barley	nucleus	44.24	34.69
EES05709	Sorghum	nucleus	45.35	34.56
TraesCS6A01G262200.1	Wheat	nucleus	43.49	34.41
Solyc08g077460.2.1	Tomato	nucleus	44.24	34.2
Solyc06g061020.2.1	Tomato	nucleus	42.01	34.14
CDX77733	Canola	nucleus	37.92	34.0
PGSC0003DMT400004642	Potato	nucleus	43.49	33.81
Zm00001d051484_P001	Maize	nucleus, plastid	44.24	33.71
CDY33511	Canola	nucleus	37.92	33.66
KRH57556	Soybean	nucleus	43.12	33.14
KRH04275	Soybean	nucleus	43.87	33.05
GSMUA_Achr4P23050_001	Banana	nucleus	23.05	32.98
GSMUA_Achr7P00850_001	Banana	plastid	27.88	32.61
AT5G47050.1	Thale cress	nucleus	36.06	32.33
Solyc08g007120.2.1	Tomato	nucleus	39.78	32.33
PGSC0003DMT400068387	Potato	nucleus	40.89	32.16
GSMUA_Achr4P28300_001	Banana	nucleus	28.62	31.95
CDY37172	Canola	cytosol	35.69	31.79
Bra017511.1-P	Field mustard	nucleus	34.94	31.13
CDY43447	Canola	nucleus	34.94	31.13
CDY51856	Canola	cytosol	34.94	31.02
CDX90458	Canola	cytosol	34.94	30.92
AT4G17680.1	Thale cress	nucleus	34.94	29.94
AT1G32740.1	Thale cress	nucleus	34.57	29.81
CDY03162	Canola	cytosol	34.94	29.19
GSMUA_Achr5P02100_001	Banana	plastid	26.02	28.69
PGSC0003DMT400052841	Potato	nucleus	37.17	28.65
GSMUA_Achr2P13160_001	Banana	plastid	24.91	27.13
Bra022093.1-P	Field mustard	nucleus	21.93	26.82
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus, plastid	27.51	25.69
Bra012650.1-P	Field mustard	nucleus	33.09	25.5
GSMUA_Achr2P21330_001	Banana	nucleus	26.77	25.09
GSMUA_Achr4P32070_001	Banana	nucleus	26.39	24.83
GSMUA_Achr6P11810_001	Banana	nucleus	27.88	24.67
GSMUA_Achr10P...	Banana	nucleus	29.0	24.53
GSMUA_Achr6P31690_001	Banana	nucleus	24.16	21.81
GSMUA_Achr6P16260_001	Banana	nucleus	26.77	21.36
GSMUA_Achr11P...	Banana	nucleus	24.54	20.69
GSMUA_Achr9P09830_001	Banana	nucleus	23.79	19.94
GSMUA_Achr10P...	Banana	nucleus	23.42	19.81
GSMUA_Achr6P08300_001	Banana	plastid	25.28	19.65
GSMUA_Achr6P10180_001	Banana	plastid	22.68	17.58
GSMUA_Achr11P...	Banana	nucleus	23.79	17.11

Protein Annotations

EnsemblPlants:GSMUA_Achr2P12040_001	EnsemblPlants:GSMUA_Achr2T12040_001	EnsemblPlantsGene:GSMUA_Achr2G12040_001	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF13
PFAM:PF13920	PFscan:PS50089	PIRSF:PIRSF036836	SEG:seg	UniParc:UPI000296F887	UniProt:M0S795
MapMan:35.2	:	:	:	:	:

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G12040_001]

Coordinates

chr2:+:14596383..14597275

Molecular Weight (calculated)

29804.6 Da

IEP (calculated)

8.062

GRAVY (calculated)

-0.531

Length

269 amino acids

Sequence
(BLAST)

001: MAPSPPPPPL QQQHQSRLLS FLSMKPQPCS PAPVSIAELQ MHPPSKVSLG LRLTAEEKRR HRRETQSNPL LSSASSSSST VLHEELVALV NHQRDEIDTL
101: LLAQEEQLRR ALAERRQRHY RALLNAAEES AARRLREKEA EVGRLARRRG ELENRLALLR TETMAWQAKA MADQVTAAAL NAQLEKAAAA PERKEISGDS
201: PPAEDAESGF EDPDRVERER ACRSCQCRRA SVVLLPCRHL CLCDACDAAS DSCPVCRCVT TGSVRVLLS

Best Arabidopsis Sequence Match ( AT1G32740.1 )
(BLAST)

001: MAVQAQHHSS NLLFLNKRNG KEKEHSNFTL QSQAAGDFLD QTNMLFNNGS SNQRKRRRET NNHQLLPMQS HQFPQVIDLS LLHNYNHPPS NMVHTGLRLF
101: SGEDQAQKIS HLSEDVFAAH INRQSEELDE FLHAQAEELR RTLAEKRKMH YKALLGAVEE SLVRKLREKE VEIERATRRH NELVARDSQL RAEVQVWQER
201: AKAHEDAAAS LQSQLQQAVN QCAGGCVSAQ DSRAAEEGLL CTTISGVDDA ESVYVDPERV KRPNCKACRE REATVVVLPC RHLSICPGCD RTALACPLCL
301: TLRNSSVEAI FC

Arabidopsis Description

SBP (S-ribonuclease binding protein) family protein [Source:UniProtKB/TrEMBL;Acc:Q8LCK5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.