Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- plastid 6
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43388 | Canola | extracellular | 51.82 | 59.07 |
| EER99115 | Sorghum | plastid | 56.36 | 54.87 |
| Os09t0493600-01 | Rice | plastid | 55.91 | 54.67 |
| VIT_19s0027g00700.t01 | Wine grape | plastid | 52.27 | 52.51 |
| TraesCS5D01G279000.1 | Wheat | mitochondrion, plastid | 53.18 | 52.0 |
| Zm00001d020971_P002 | Maize | plastid | 55.45 | 51.69 |
| Bra039355.1-P | Field mustard | plastid | 54.55 | 51.28 |
| KRH13673 | Soybean | plastid | 55.91 | 51.25 |
| TraesCS5B01G271700.1 | Wheat | mitochondrion, plastid | 52.27 | 51.11 |
| TraesCS5A01G271400.1 | Wheat | mitochondrion, plastid | 52.73 | 51.1 |
| CDY24236 | Canola | plastid | 55.0 | 51.05 |
| CDY60119 | Canola | plastid | 54.09 | 50.21 |
| Bra034716.1-P | Field mustard | plastid | 53.64 | 49.79 |
| CDY23554 | Canola | plastid | 53.64 | 49.79 |
| AT3G12930.1 | Thale cress | plastid | 53.64 | 49.58 |
| PGSC0003DMT400056899 | Potato | plastid | 52.27 | 49.36 |
| Solyc07g066460.2.1 | Tomato | plastid | 51.82 | 48.93 |
| KRH43792 | Soybean | plastid | 55.45 | 45.19 |
Protein Annotations
| Gene3D:3.30.460.10 | MapMan:35.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0009507 | GO:GO:0009536 | EnsemblPlantsGene:GSMUA_Achr4G09860_001 | EnsemblPlants:GSMUA_Achr4P09860_001 | EnsemblPlants:GSMUA_Achr4T09860_001 | InterPro:Iojap/RsfS/C7orf30 |
| UniProt:M0SMK3 | HAMAP:MF_01477 | PFAM:PF02410 | PANTHER:PTHR21043 | PANTHER:PTHR21043:SF1 | SUPFAM:SSF81301 |
| TIGRFAMs:TIGR00090 | UniParc:UPI000296CAF8 | SEG:seg | : | : | : |
Description
Lojap-related protein [Source:Projected from Arabidopsis thaliana (AT3G12930) TAIR;Acc:AT3G12930]
Coordinates
chr4:-:7162987..7165493
Molecular Weight (calculated)
24482.0 Da
IEP (calculated)
7.459
GRAVY (calculated)
-0.290
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MHALAALPSC PRHQPALTLD LMRTTTTTTG WCGGRPAPCL PCNRRSPSSL HVALCRRPSD HEVGAGDADD VFDDLFKKYG KVVYKSGDQK RPAAEADDDS
101: ESLSFAVTLA KVANEVKAAD IRVLFVKPLV YWTRFFIIVT AFSRPQIDAI GSKIRDTAEK QFNKIASGDT KPNSWTLLDF GDVVVHIFLP QQRAYYNLEE
201: FYGNATPIEL PFDNQTPFRS
101: ESLSFAVTLA KVANEVKAAD IRVLFVKPLV YWTRFFIIVT AFSRPQIDAI GSKIRDTAEK QFNKIASGDT KPNSWTLLDF GDVVVHIFLP QQRAYYNLEE
201: FYGNATPIEL PFDNQTPFRS
001: MASSTGLTVA GALLAGDFRL PAVSSLIPRK TSSSLSCLSN RDLSSPYNCC WRLSRGKILT SLSNSRKFAV GKEAEDGFLS NVSEDTDEMF DDLFNKYGKV
101: VFRSTDVKSP TAEVDDDAES LAFAVELAKV ASDVKAGDIK VLFVKPLVYW TRFFIIATAF SRPQIDAIGS RMRDLAEKKY GKVANGDVKP NSWTLLDFGD
201: VVIHLFLPPQ RTFYNLEDFY GNAMQIELPF EDQSQPRN
101: VFRSTDVKSP TAEVDDDAES LAFAVELAKV ASDVKAGDIK VLFVKPLVYW TRFFIIATAF SRPQIDAIGS RMRDLAEKKY GKVANGDVKP NSWTLLDFGD
201: VVIHLFLPPQ RTFYNLEDFY GNAMQIELPF EDQSQPRN
Arabidopsis Description
IJProtein Iojap, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LDY9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.