Factsheet for GSMUA_Achr3P11670_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P19720_001	Banana	cytosol	85.6	86.01
Os06t0688100-02	Rice	cytosol	57.75	58.68
TraesCS6A01G171400.1	Wheat	cytosol	51.42	54.71
TraesCS6D01G161100.3	Wheat	cytosol	54.43	54.09
KXG20689	Sorghum	cytosol	52.85	53.78
TraesCS6B01G199600.1	Wheat	cytosol	53.48	53.57
TraesCS7D01G430000.2	Wheat	cytosol	52.85	52.93
HORVU7Hr1G100370.1	Barley	cytosol	52.69	52.61
TraesCS7B01G339300.1	Wheat	cytosol	52.53	52.53
TraesCS7A01G440500.1	Wheat	cytosol	52.37	52.37
VIT_04s0044g01700.t01	Wine grape	cytosol	50.63	51.04
Zm00001d014575_P002	Maize	cytosol	52.53	50.3
CDY71933	Canola	cytosol	27.37	49.71
KRH39395	Soybean	cytosol	48.73	49.04
KRH07819	Soybean	cytosol	48.42	48.8
TraesCS4B01G109300.1	Wheat	cytosol	43.83	47.27
Bra022989.1-P	Field mustard	cytosol	42.72	46.23
AT2G34750.1	Thale cress	cytosol	44.62	46.0
Bra021928.1-P	Field mustard	nucleus	43.2	45.65
CDX84629	Canola	cytosol	43.99	45.35
CDY43658	Canola	cytosol	43.2	45.12
Solyc02g082340.2.1	Tomato	nucleus	43.99	45.06
Zm00001d036138_P002	Maize	cytosol	17.09	44.81
CDX79576	Canola	cytosol	43.04	44.74
AT1G30590.2	Thale cress	cytosol	41.46	43.16
AT2G39240.1	Thale cress	cytosol	38.29	42.23
CDX84284	Canola	cytosol	40.03	42.17
CDY31637	Canola	cytosol	38.77	42.02
Bra005396.1-P	Field mustard	cytosol	40.82	41.08
VIT_04s0044g01800.t01	Wine grape	cytosol, extracellular, nucleus	10.76	36.96
CDY36511	Canola	plastid	10.76	25.19

Protein Annotations

EnsemblPlants:GSMUA_Achr3P11670_001	EnsemblPlants:GSMUA_Achr3T11670_001	EnsemblPlantsGene:GSMUA_Achr3G11670_001	InterPro:RNA_pol_I_trans_ini_fac_RRN3	PANTHER:PTHR12790	PFAM:PF05327
SEG:seg	UniParc:UPI000295D4F9	UniProt:M0SDT4	MapMan:15.2.1	:	:

Description

RNA polymerase I specific transcription initiation factor RRN3 family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G11670_001]

Coordinates

chr3:-:8682179..8691048

Molecular Weight (calculated)

71994.0 Da

IEP (calculated)

4.820

GRAVY (calculated)

-0.080

Length

632 amino acids

Sequence
(BLAST)

001: MGVELASNDL PIFEVEDCYL SDSEAFASVI HVLDGVRMAS VLVAQSDRDQ YDYLLSIVDP GKRMGPDEEA LLATALKALS GAVSKIDIVY HGSLISNIFG
101: LCLWNYGLDA RNALLELITS LAAVPDKFLD GCLRMLVNNF LPPRRLRESI SQSRWITRKK EVHSELHMAL HYITDVVPLA PMKLKSIIEK RMPRCTDPKD
201: MIVLYVECML GLENDEIGEF LGSTLLAKLV DLLTDLDVNI TWEDILQEEH NKGIFEMELE EWEDNMGTDA EVGVKPPMEN GVLKGNAFAD KLDGLMVIVC
301: EHLKSRAENG HLLKVFEALS EIFRRAMLKL HKSKFAQFLM FYACSLDPDI CGLKFAVLLT DIFVSKNEDP DSRMKAVAYL ASYLARAKFV SSSMVASILK
401: RLVDWCFEYC QFQDNQGKIN PQAHRVFYSG CQAAMYILCF RMRSILDVPH LKHLLFHMPL GSILCHPTLD PLKVCLPSIV QEFLRQAKAA RLFKTSVPYL
501: YDYSLESEFS KAFGGIERLD MFFPFDPYLL KESDRFMRPN FEFWSMVKTT YSNCNSEDEY EFDDLDAPDF PENAGIYEEH DDLDLDNGDD LEYSLNKMSI
601: TPKPAFQHPI NTNFHQPARM PARIRPSVSP TW

Best Arabidopsis Sequence Match ( AT2G34750.1 )
(BLAST)

001: MGAVELMSDP SSLCTVENYV DNVDLSDTQL VQTVRKALTS VKTGDSDLYS EMVGVMARDI KEFKDPDVVA QLETVLKALS GAVACIDVLH HQKLLSALFR
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL

Arabidopsis Description

RNA polymerase I specific transcription initiation factor RRN3 protein [Source:UniProtKB/TrEMBL;Acc:Q8L643]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.