Factsheet for AT2G39240.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71933	Canola	cytosol	39.62	65.23
AT1G30590.2	Thale cress	cytosol	62.3	58.81
AT2G34750.1	Thale cress	cytosol	61.78	57.75
VIT_04s0044g01700.t01	Wine grape	cytosol	47.64	43.54
KRH39395	Soybean	cytosol	45.9	41.88
KRH07819	Soybean	cytosol	45.55	41.63
GSMUA_Achr3P11670_001	Banana	cytosol	42.23	38.29
Solyc02g082340.2.1	Tomato	nucleus	40.49	37.6
GSMUA_Achr1P19720_001	Banana	cytosol	40.84	37.2
Os06t0688100-02	Rice	cytosol	38.92	35.85
TraesCS6A01G171400.1	Wheat	cytosol	36.65	35.35
TraesCS6D01G161100.3	Wheat	cytosol	38.39	34.59
KXG20689	Sorghum	cytosol	37.17	34.3
VIT_04s0044g01800.t01	Wine grape	cytosol, extracellular, nucleus	10.99	34.24
TraesCS6B01G199600.1	Wheat	cytosol	37.7	34.23
TraesCS7D01G430000.2	Wheat	cytosol	37.0	33.6
HORVU7Hr1G100370.1	Barley	cytosol	36.65	33.18
TraesCS7B01G339300.1	Wheat	cytosol	36.47	33.07
TraesCS7A01G440500.1	Wheat	cytosol	36.13	32.75
Zm00001d014575_P002	Maize	cytosol	36.13	31.36
TraesCS4B01G109300.1	Wheat	cytosol	31.41	30.72
Zm00001d036138_P002	Maize	cytosol	10.12	24.07

Protein Annotations

MapMan:15.2.1	EntrezGene:818509	ProteinID:AEC09649.1	ProteinID:ANM62209.1	InterPro:ARM-type_fold	ArrayExpress:AT2G39240
EnsemblPlantsGene:AT2G39240	RefSeq:AT2G39240	TAIR:AT2G39240	RefSeq:AT2G39240-TAIR-G	EnsemblPlants:AT2G39240.1	TAIR:AT2G39240.1
EMBL:DQ446608	GO:GO:0001042	GO:GO:0001180	GO:GO:0001181	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006356	GO:GO:0006412	GO:GO:0006413
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
RefSeq:NP_001324384.1	RefSeq:NP_181457.2	PFAM:PF05327	PO:PO:0000293	PANTHER:PTHR12790	UniProt:Q1PEV9
InterPro:RNA_pol_I_trans_ini_fac_RRN3	SUPFAM:SSF48371	UniParc:UPI0000D5BC91	SEG:seg	:	:

Description

RNA polymerase I specific transcription initiation factor RRN3 family protein [Source:UniProtKB/TrEMBL;Acc:Q1PEV9]

Coordinates

chr2:-:16384786..16388502

Molecular Weight (calculated)

64306.3 Da

IEP (calculated)

4.842

GRAVY (calculated)

-0.066

Length

573 amino acids

Sequence
(BLAST)

001: MGAEEVETAD LSDKALVSAI REVLASAQSG DTDQYNELVQ LMYIKKKKSG DDAMAQPEVP DDVDVVAQRE TLLKILSHSV ACLDDVHHNH LLQLILGTRI
101: WDHKPNVIYA LLDLIISLAT TSGKHLSSCL DTLVSNLRSQ PRKLDNKMLE VLSRVHAALH KISYLVPLAP SILLPILAQS MPSVHDKARL QVVVPYVKNL
201: LKLENSSIIG KVVGKDILMM VMGRFRDLDS EIECDDNLQN DSSLAMFDME LDVAVEGTLV SKLLDDLMVE SFNHLKSCQD AGRLDEVFEN LFESFENLIL
301: NTQKLKFSQF LMFYACSLDP ENCGVKFASK LLEKFLSSNN NQVTRTNAVT YLASYLARAN FLSASFVASM LKRLVDECAD YCRTCNDDAR PEVHQVFYSG
401: CQAILYVLCF RMRSILEVPH FQSQLTPLES VLSHKLDPLR VCLSSVVSEF LIQAKACGLF IVSDAFIFDD LSESELSRAL GGFFPFPWLL EKSNSLISPH
501: FIKRSEVKKT YEQAEVTVYG DTDNEEDSDD DVDPDNEMNK MSITPKHSVM HETERLLKMP SRISPSTSPR ESL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.