Factsheet for Zm00001d036138_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014575_P002	Maize	cytosol	74.69	27.27
KXG20689	Sorghum	cytosol	61.41	23.83
Os06t0688100-02	Rice	cytosol	57.68	22.35
TraesCS6D01G161100.3	Wheat	cytosol	52.28	19.81
TraesCS6B01G199600.1	Wheat	cytosol	51.45	19.65
TraesCS7A01G440500.1	Wheat	cytosol	50.21	19.15
TraesCS7D01G430000.2	Wheat	cytosol	49.79	19.02
TraesCS7B01G339300.1	Wheat	cytosol	49.79	18.99
TraesCS4B01G109300.1	Wheat	cytosol	45.64	18.77
HORVU7Hr1G100370.1	Barley	cytosol	48.13	18.33
TraesCS6A01G171400.1	Wheat	cytosol	43.98	17.85
GSMUA_Achr1P19720_001	Banana	cytosol	46.06	17.65
GSMUA_Achr3P11670_001	Banana	cytosol	44.81	17.09
VIT_04s0044g01800.t01	Wine grape	cytosol, extracellular, nucleus	10.79	14.13
VIT_04s0044g01700.t01	Wine grape	cytosol	34.44	13.24
KRH07819	Soybean	cytosol	33.2	12.76
KRH39395	Soybean	cytosol	33.2	12.74
AT2G34750.1	Thale cress	cytosol	30.29	11.91
Solyc02g082340.2.1	Tomato	nucleus	29.88	11.67
Bra021928.1-P	Field mustard	nucleus	28.22	11.37
CDX84284	Canola	cytosol	28.22	11.33
CDY43658	Canola	cytosol	27.8	11.07
CDY31637	Canola	cytosol	26.56	10.98
CDX79576	Canola	cytosol	26.97	10.69
Bra005396.1-P	Field mustard	cytosol	27.8	10.67
CDX84629	Canola	cytosol	26.97	10.6
Bra022989.1-P	Field mustard	cytosol	25.31	10.45
AT1G30590.2	Thale cress	cytosol	25.73	10.21
AT2G39240.1	Thale cress	cytosol	24.07	10.12
CDY71933	Canola	cytosol	11.2	7.76
CDY36511	Canola	plastid	3.32	2.96

Protein Annotations

MapMan:35.2	UniProt:A0A1D6LKX1	ProteinID:AQK80351.1	ProteinID:AQK80352.1	ProteinID:AQK80353.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0006412	GO:GO:0006413
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
PFAM:PF05327	PANTHER:PTHR10492	PANTHER:PTHR10492:SF21	InterPro:RNA_pol_I_trans_ini_fac_RRN3	UniParc:UPI00084401F3	EnsemblPlantsGene:Zm00001d036138
EnsemblPlants:Zm00001d036138_P002	EnsemblPlants:Zm00001d036138_T002	SEG:seg	:	:	:

Description

RNA polymerase I specific transcription initiation factor RRN3 protein

Coordinates

chr6:-:74179578..74183116

Molecular Weight (calculated)

28078.7 Da

IEP (calculated)

4.206

GRAVY (calculated)

-0.040

Length

241 amino acids

Sequence
(BLAST)

001: MGVEQGYEDM QGTFRDSEVF EFVGKVLQSV WMDLFLIDIR DKDYYDYMLG IVDPTKKRST DDEAMFVTIL RALSQAVSKI DIVYHHALLH NIFTMCVWHL
101: HSDTRVVFLD LMTILKMASF VKCMLGLDAV VWDIIGSSLL EKVVYLLTEL DVNITWEDIL QDEHNKGIFD MELEDLGEDE DNLGQEGTKV CHISRAILTT
201: RNDWVDTINM RMIDRFQGEQ MMYHSFDTTV DDPNNYYLIT I

Best Arabidopsis Sequence Match ( AT2G34750.1 )
(BLAST)

001: MGAVELMSDP SSLCTVENYV DNVDLSDTQL VQTVRKALTS VKTGDSDLYS EMVGVMARDI KEFKDPDVVA QLETVLKALS GAVACIDVLH HQKLLSALFR
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL

Arabidopsis Description

RNA polymerase I specific transcription initiation factor RRN3 protein [Source:UniProtKB/TrEMBL;Acc:Q8L643]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.