Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022989.1-P | Field mustard | cytosol | 93.64 | 98.29 |
| CDX79576 | Canola | cytosol | 95.11 | 95.89 |
| CDY43658 | Canola | cytosol | 79.28 | 80.33 |
| AT2G34750.1 | Thale cress | cytosol | 74.23 | 74.23 |
| CDX84284 | Canola | cytosol | 71.45 | 73.0 |
| CDY31637 | Canola | cytosol | 68.03 | 71.53 |
| CDY71933 | Canola | cytosol | 38.17 | 67.24 |
| VIT_04s0044g01700.t01 | Wine grape | cytosol | 53.02 | 51.83 |
| KRH39395 | Soybean | cytosol | 48.45 | 47.29 |
| KRH07819 | Soybean | cytosol | 47.63 | 46.57 |
| Solyc02g082340.2.1 | Tomato | nucleus | 45.02 | 44.73 |
| GSMUA_Achr3P11670_001 | Banana | cytosol | 45.35 | 43.99 |
| GSMUA_Achr1P19720_001 | Banana | cytosol | 43.23 | 42.13 |
| Os06t0688100-02 | Rice | cytosol | 42.25 | 41.64 |
| TraesCS6A01G171400.1 | Wheat | cytosol | 39.15 | 40.4 |
| TraesCS6D01G161100.3 | Wheat | cytosol | 40.46 | 38.99 |
| TraesCS6B01G199600.1 | Wheat | cytosol | 39.97 | 38.83 |
| KXG20689 | Sorghum | cytosol | 39.15 | 38.65 |
| TraesCS7B01G339300.1 | Wheat | cytosol | 39.8 | 38.61 |
| HORVU7Hr1G100370.1 | Barley | cytosol | 39.48 | 38.23 |
| TraesCS7D01G430000.2 | Wheat | cytosol | 39.31 | 38.19 |
| TraesCS7A01G440500.1 | Wheat | cytosol | 39.15 | 37.97 |
| VIT_04s0044g01800.t01 | Wine grape | cytosol, extracellular, nucleus | 11.26 | 37.5 |
| Zm00001d014575_P002 | Maize | cytosol | 38.99 | 36.21 |
| TraesCS4B01G109300.1 | Wheat | cytosol | 32.3 | 33.79 |
| CDY36511 | Canola | plastid | 13.87 | 31.48 |
| Zm00001d036138_P002 | Maize | cytosol | 10.6 | 26.97 |
Protein Annotations
| EnsemblPlants:CDX84629 | EnsemblPlantsGene:GSBRNA2T00141900001 | GO:GO:0003674 | GO:GO:0005488 | InterPro:ARM-type_fold | InterPro:RNA_pol_I_trans_ini_fac_RRN3 |
| PANTHER:PTHR12790 | PFAM:PF05327 | ProteinID:CDX84629 | ProteinID:CDX84629.1 | SEG:seg | SUPFAM:SSF48371 |
| UniParc:UPI0004EE70BA | MapMan:15.2.1 | : | : | : | : |
Description
BnaA03g16010D
Coordinates
chrLK031838:+:476879..480353
Molecular Weight (calculated)
69278.3 Da
IEP (calculated)
4.539
GRAVY (calculated)
-0.117
Length
613 amino acids
Sequence
(BLAST)
(BLAST)
001: MGASEALTDP SSLYNVGNND LSDTETVLNV RNALASVQNG ESDLLYDQFV ETIQINNRSD HALGAQLDAL LKALSGSVAC IDVNHHRRIL SGIFGMSLWD
101: HKPHVMDSLM DLIISLAATS GKYLDNCLNM LIRHFVPPPW VIDRLWQGRV IEQKQHVLSR VHGALLKISL LVPLAPSRLL PMLAHQLPKI NKKDQVVVIY
201: VENLLKLENS SIGQVGGGMI FMMVMERLRD LDLEIDWDDI LQDDSNRGMF DMELEDAMNE GDELPVGSLN QDTSGGKIES LDKLMVTCFD HLESCNLHGR
301: LDQVFEKLFD SFENFILNTY KSKVSQFLMF YACSLDPENC GVKFGSKLLD IFLSSNKPRP TRQVSLSPLW MSAVAYLASY LARGKFLPIS YVASMLKRLV
401: DECADYCRIC NDDIRPEAHQ LFYSGCQAIM YVLCFRMRSI LDVPRFRSEL IPLESILMHK LNPLMVCLPS VVAEFLRQAK AGGLFVVSDS FIFEDLLESE
501: LSRAFGGCER LDTFFPFDPC LLKSSNSNIS GNFIYWSMVR PTYDKDDDEE DDDDAEIIVN GDEESDEEDE GDLDYALNKM SITPKHSFKN NMERERLMKM
601: PSMIRPSTSP ESL
101: HKPHVMDSLM DLIISLAATS GKYLDNCLNM LIRHFVPPPW VIDRLWQGRV IEQKQHVLSR VHGALLKISL LVPLAPSRLL PMLAHQLPKI NKKDQVVVIY
201: VENLLKLENS SIGQVGGGMI FMMVMERLRD LDLEIDWDDI LQDDSNRGMF DMELEDAMNE GDELPVGSLN QDTSGGKIES LDKLMVTCFD HLESCNLHGR
301: LDQVFEKLFD SFENFILNTY KSKVSQFLMF YACSLDPENC GVKFGSKLLD IFLSSNKPRP TRQVSLSPLW MSAVAYLASY LARGKFLPIS YVASMLKRLV
401: DECADYCRIC NDDIRPEAHQ LFYSGCQAIM YVLCFRMRSI LDVPRFRSEL IPLESILMHK LNPLMVCLPS VVAEFLRQAK AGGLFVVSDS FIFEDLLESE
501: LSRAFGGCER LDTFFPFDPC LLKSSNSNIS GNFIYWSMVR PTYDKDDDEE DDDDAEIIVN GDEESDEEDE GDLDYALNKM SITPKHSFKN NMERERLMKM
601: PSMIRPSTSP ESL
001: MGAVELMSDP SSLCTVENYV DNVDLSDTQL VQTVRKALTS VKTGDSDLYS EMVGVMARDI KEFKDPDVVA QLETVLKALS GAVACIDVLH HQKLLSALFR
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL
Arabidopsis Description
RNA polymerase I specific transcription initiation factor RRN3 protein [Source:UniProtKB/TrEMBL;Acc:Q8L643]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.