Factsheet for Solyc02g082340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0044g01700.t01	Wine grape	cytosol	58.83	57.89
KRH07819	Soybean	cytosol	49.27	48.48
KRH39395	Soybean	cytosol	49.27	48.41
Bra022989.1-P	Field mustard	cytosol	43.76	46.23
AT2G34750.1	Thale cress	cytosol	45.38	45.68
Bra021928.1-P	Field mustard	nucleus	44.08	45.48
CDX84629	Canola	cytosol	44.73	45.02
CDX79576	Canola	cytosol	44.25	44.9
CDY43658	Canola	cytosol	43.92	44.79
GSMUA_Achr3P11670_001	Banana	cytosol	45.06	43.99
CDY71933	Canola	cytosol	24.8	43.97
AT1G30590.2	Thale cress	cytosol	42.79	43.49
GSMUA_Achr1P19720_001	Banana	cytosol	44.08	43.24
CDX84284	Canola	cytosol	41.65	42.83
CDY31637	Canola	cytosol	40.36	42.71
Os06t0688100-02	Rice	cytosol	41.65	41.32
Bra005396.1-P	Field mustard	cytosol	41.98	41.24
AT2G39240.1	Thale cress	cytosol	37.6	40.49
TraesCS6B01G199600.1	Wheat	cytosol	40.84	39.94
TraesCS6A01G171400.1	Wheat	cytosol	38.41	39.9
TraesCS6D01G161100.3	Wheat	cytosol	40.36	39.15
TraesCS7A01G440500.1	Wheat	cytosol	39.38	38.45
HORVU7Hr1G100370.1	Barley	cytosol	39.38	38.39
TraesCS7B01G339300.1	Wheat	cytosol	39.22	38.29
TraesCS7D01G430000.2	Wheat	cytosol	38.74	37.88
KXG20689	Sorghum	cytosol	37.76	37.52
Zm00001d014575_P002	Maize	cytosol	39.22	36.67
TraesCS4B01G109300.1	Wheat	cytosol	32.58	34.3
Zm00001d036138_P002	Maize	cytosol	11.67	29.88
CDY36511	Canola	plastid	9.72	22.22

Protein Annotations

MapMan:15.2.1	GO:GO:0001042	GO:GO:0001180	GO:GO:0001181	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006356	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:K4BAA4
PFAM:PF05327	PANTHER:PTHR12790	InterPro:RNA_pol_I_trans_ini_fac_RRN3	EnsemblPlantsGene:Solyc02g082340.2	EnsemblPlants:Solyc02g082340.2.1	UniParc:UPI0002767F15
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:-:46032786..46040382

Molecular Weight (calculated)

69956.6 Da

IEP (calculated)

4.628

GRAVY (calculated)

-0.034

Length

617 amino acids

Sequence
(BLAST)

001: MGMELHAESA GCAEMEIAEI TDSDLFKLVR HALKSVIQGD PDQYEQLLRV MHPDEGVLPD VALLVTCLKA LSGSVSCLDI VHHKSLIASI LQMSMWNYGT
101: DVMDALMEFN ISLATSSGQY VDLCLEMLVS NFMPPDSFIS LLNQPRGILR KGQVIDRVHS TLTYIAKLVP LSPLRLERMI TERMPHIFTK EPLILIYVEN
201: MLKLESGAIG DLVGRTMLVA IMDKLIDLDV DIAWDDILQE DFTKGIFDME LGDLEWPMDD GQQNGDELQI SWMERYFSGN LNAQKLDSLI VLTFEHLNIC
301: KESGRLSQVF HTLLQSFQQT VLMAYKSKFA QFVLFYACSL DPENCGRRFA DTLFHKFKSS KYPEWRMSAV AYLASYLARA KFLPISFVAE YVESLLEWCS
401: SYCFNQGGSI NPKAHKEFYA GCQALMYVLC FRMRSMLAIP RIRSRISKHI EDILRHPLSP LMVCLPSIVE EFLRLAKVTH LDVPDNVVSS NLLESELSMA
501: FGGRERLDTF FPFDPCLLMK SDRFIRPNFV YWSMVRNSYD NDDDDEGTSD EDDIEICTAG NGINIPNDGA ARSYDQDLDE FGNKMSKMSI TPKVAQWGEL
601: QSGRQMPSSL LPCPDSL

Best Arabidopsis Sequence Match ( AT2G34750.1 )
(BLAST)

001: MGAVELMSDP SSLCTVENYV DNVDLSDTQL VQTVRKALTS VKTGDSDLYS EMVGVMARDI KEFKDPDVVA QLETVLKALS GAVACIDVLH HQKLLSALFR
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL

Arabidopsis Description

RNA polymerase I specific transcription initiation factor RRN3 protein [Source:UniProtKB/TrEMBL;Acc:Q8L643]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.