Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G339300.1 | Wheat | cytosol | 94.45 | 94.3 |
| TraesCS7A01G440500.1 | Wheat | cytosol | 93.82 | 93.67 |
| HORVU7Hr1G100370.1 | Barley | cytosol | 90.81 | 90.52 |
| TraesCS6D01G161100.3 | Wheat | cytosol | 81.78 | 81.13 |
| Os06t0688100-02 | Rice | cytosol | 73.06 | 74.12 |
| KXG20689 | Sorghum | cytosol | 66.72 | 67.79 |
| Zm00001d014575_P002 | Maize | cytosol | 65.93 | 63.03 |
| GSMUA_Achr3P11670_001 | Banana | cytosol | 52.93 | 52.85 |
| GSMUA_Achr1P19720_001 | Banana | cytosol | 52.61 | 52.78 |
| Zm00001d036138_P002 | Maize | cytosol | 19.02 | 49.79 |
| VIT_04s0044g01700.t01 | Wine grape | cytosol | 43.26 | 43.54 |
| CDY71933 | Canola | cytosol | 23.77 | 43.1 |
| KRH39395 | Soybean | cytosol | 42.79 | 42.99 |
| KRH07819 | Soybean | cytosol | 42.47 | 42.74 |
| Bra022989.1-P | Field mustard | cytosol | 37.4 | 40.41 |
| AT2G34750.1 | Thale cress | cytosol | 39.14 | 40.29 |
| CDX79576 | Canola | cytosol | 38.35 | 39.8 |
| CDY43658 | Canola | cytosol | 38.03 | 39.67 |
| CDX84629 | Canola | cytosol | 38.19 | 39.31 |
| Bra021928.1-P | Field mustard | nucleus | 37.24 | 39.3 |
| Solyc02g082340.2.1 | Tomato | nucleus | 37.88 | 38.74 |
| AT1G30590.2 | Thale cress | cytosol | 36.93 | 38.39 |
| CDY31637 | Canola | cytosol | 34.55 | 37.39 |
| CDX84284 | Canola | cytosol | 35.18 | 37.0 |
| AT2G39240.1 | Thale cress | cytosol | 33.6 | 37.0 |
| Bra005396.1-P | Field mustard | cytosol | 35.5 | 35.67 |
| VIT_04s0044g01800.t01 | Wine grape | cytosol, extracellular, nucleus | 8.87 | 30.43 |
| CDY36511 | Canola | plastid | 8.4 | 19.63 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G430000.2 | EnsemblPlantsGene:TraesCS7D01G430000 | InterPro:RNA_pol_I_trans_ini_fac_RRN3 | PANTHER:PTHR12790 | PFAM:PF05327 | SEG:seg |
| MapMan:15.2.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7D:-:549511240..549517850
Molecular Weight (calculated)
72035.6 Da
IEP (calculated)
4.596
GRAVY (calculated)
-0.143
Length
631 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAELRRDDM AEEAGTIRDS VAFRLVERVL QSVRMEPFLI APYDLEQYRM MVGTLDTSRT KNRDDEALYV TYLKALSEAV SKIDITYHHS LLNNIFAVRI
101: WYLQRDTMVA LLDLITRLAA VADQYLRECL QMLVNNFTPP IVERNEVPTW AVSRKKDIFS HLCGSLKTIS DTVPLAPRML RDIIDRSMPK LFDNKAKMIS
201: FVECMLGLDT DRMGDLIGAI LLAKVVDLLT ELDVNITWED ILQEEHDKGI FEMELEDLDA DDDGDGFGQA GTKVCLGGNA CAEKLDGLMV VVCEHLKSLD
301: RQRLYKEFVI LKTIFRASLL RVHRSKFAQF IMFYTCSLDP KTLGEGFAVF LTDIVTEKKE DPISRMSAVS YVGSYLSRAR FISADTVVTI LKKLVDWCVD
401: YCDHQSKREA TPIPNHQLFY ATCQAVMYVL CFRLRSIMDY PNLKSDLFHM PFGFLFRHRL EPLKVCLPSI VNEFLRQAKD AGLVAAFVDP AAEDAIESDL
501: SRTFGGINRL DMFFPFDPYL LKESDRYIRP NFEFWSMVKT TYSDDTDDDD DELEDLDAPE MNVGSLDDHV EIDINSDDDD LEYSMNKMSI TPHHSFLHQM
601: AMDSDGGLSM PARIRPSTSP PSRWAMSGES P
101: WYLQRDTMVA LLDLITRLAA VADQYLRECL QMLVNNFTPP IVERNEVPTW AVSRKKDIFS HLCGSLKTIS DTVPLAPRML RDIIDRSMPK LFDNKAKMIS
201: FVECMLGLDT DRMGDLIGAI LLAKVVDLLT ELDVNITWED ILQEEHDKGI FEMELEDLDA DDDGDGFGQA GTKVCLGGNA CAEKLDGLMV VVCEHLKSLD
301: RQRLYKEFVI LKTIFRASLL RVHRSKFAQF IMFYTCSLDP KTLGEGFAVF LTDIVTEKKE DPISRMSAVS YVGSYLSRAR FISADTVVTI LKKLVDWCVD
401: YCDHQSKREA TPIPNHQLFY ATCQAVMYVL CFRLRSIMDY PNLKSDLFHM PFGFLFRHRL EPLKVCLPSI VNEFLRQAKD AGLVAAFVDP AAEDAIESDL
501: SRTFGGINRL DMFFPFDPYL LKESDRYIRP NFEFWSMVKT TYSDDTDDDD DELEDLDAPE MNVGSLDDHV EIDINSDDDD LEYSMNKMSI TPHHSFLHQM
601: AMDSDGGLSM PARIRPSTSP PSRWAMSGES P
001: MGAEEFPSVP FNSNAMDNAE YTDTDLVFAV RKALASVQNG DTDDYSQLKT VMCLTEDADF DAVAQLETVL KSLSVSVAWI DLVHHKDLLE AMSLWYHSHR
101: PSVMDALVDL IISLAATSGK YLDPCLNMLV RNFSQPTFKH KVSQTQLVKK MQEVHPRVHA ALHKISYLIP LAPWNLVSIL AQNMRKIDKK DPSIVTYVDN
201: LLRLENSSIG EVVGSVILMM VMERMLDLDL VSGCDDSNGG MFDMELEDAV ESTMNEGDEF PVGALKQNTS GGNVVSELLD KLMVLFFHHL ESCQNSDRLD
301: EVFEILFKSF ENYILNTYKT KFSQFLMFYA CSLDPENCGV RFASKLLDIY LSSNTCRLTR MSAVAYLASY LSRGKFLPAS FVASMLKRLV DECAEYCGTC
401: NDDVKPEAHQ VFYSGCQAIL YVLCFRMRSI VEIPRFQSQF RSLESILSHK LNPLLVCLPS VVSEFLKQAK AGGLFIVSES FIFDDLHESE LSRAFGGFER
501: LDTFFPFDPC LLKMSSSYIS PNFNFWSMVK TTYGEDGDEE LCDEVIVNGD ADSAEEPDDD VELDSEMNTM STTPKHSFMR ETERLLKMPS RIRPSTSPPE
601: SFLI
101: PSVMDALVDL IISLAATSGK YLDPCLNMLV RNFSQPTFKH KVSQTQLVKK MQEVHPRVHA ALHKISYLIP LAPWNLVSIL AQNMRKIDKK DPSIVTYVDN
201: LLRLENSSIG EVVGSVILMM VMERMLDLDL VSGCDDSNGG MFDMELEDAV ESTMNEGDEF PVGALKQNTS GGNVVSELLD KLMVLFFHHL ESCQNSDRLD
301: EVFEILFKSF ENYILNTYKT KFSQFLMFYA CSLDPENCGV RFASKLLDIY LSSNTCRLTR MSAVAYLASY LSRGKFLPAS FVASMLKRLV DECAEYCGTC
401: NDDVKPEAHQ VFYSGCQAIL YVLCFRMRSI VEIPRFQSQF RSLESILSHK LNPLLVCLPS VVSEFLKQAK AGGLFIVSES FIFDDLHESE LSRAFGGFER
501: LDTFFPFDPC LLKMSSSYIS PNFNFWSMVK TTYGEDGDEE LCDEVIVNGD ADSAEEPDDD VELDSEMNTM STTPKHSFMR ETERLLKMPS RIRPSTSPPE
601: SFLI
Arabidopsis Description
RNA polymerase I specific transcription initiation factor RRN3 protein [Source:TAIR;Acc:AT1G30590]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.