CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014575_P002	Maize	cytosol	85.02	80.0
Os06t0688100-02	Rice	cytosol	74.24	74.12
TraesCS6A01G171400.1	Wheat	cytosol	67.31	70.37
TraesCS6D01G161100.3	Wheat	cytosol	70.53	68.87
TraesCS6B01G199600.1	Wheat	cytosol	68.44	67.35
TraesCS7D01G430000.2	Wheat	cytosol	67.79	66.72
HORVU7Hr1G100370.1	Barley	cytosol	67.79	66.51
TraesCS7B01G339300.1	Wheat	cytosol	67.63	66.46
TraesCS7A01G440500.1	Wheat	cytosol	66.99	65.82
Zm00001d036138_P002	Maize	cytosol	23.83	61.41
TraesCS4B01G109300.1	Wheat	cytosol	51.69	54.78
GSMUA_Achr3P11670_001	Banana	cytosol	53.78	52.85
GSMUA_Achr1P19720_001	Banana	cytosol	53.46	52.78
VIT_04s0044g01700.t01	Wine grape	cytosol	43.96	43.54
CDY71933	Canola	cytosol	24.32	43.39
KRH39395	Soybean	cytosol	43.8	43.31
KRH07819	Soybean	cytosol	43.16	42.74
Bra022989.1-P	Field mustard	cytosol	38.0	40.41
AT2G34750.1	Thale cress	cytosol	38.65	39.15
CDX84629	Canola	cytosol	38.65	39.15
CDY43658	Canola	cytosol	38.0	39.01
CDX79576	Canola	cytosol	38.0	38.82
Bra021928.1-P	Field mustard	nucleus	37.04	38.46
AT1G30590.2	Thale cress	cytosol	37.52	38.39
Solyc02g082340.2.1	Tomato	nucleus	37.52	37.76
AT2G39240.1	Thale cress	cytosol	34.3	37.17
CDY31637	Canola	cytosol	34.78	37.05
CDX84284	Canola	cytosol	35.43	36.67
Bra005396.1-P	Field mustard	cytosol	36.07	35.67
VIT_04s0044g01800.t01	Wine grape	cytosol, extracellular, nucleus	8.86	29.89
CDY36511	Canola	plastid	9.18	21.11

Protein Annotations

EnsemblPlants:KXG20689	EnsemblPlantsGene:SORBI_3010G239600	InterPro:RNA_pol_I_trans_ini_fac_RRN3	ncoils:Coil	PANTHER:PTHR12790	PFAM:PF05327
ProteinID:KXG20689	ProteinID:KXG20689.1	SEG:seg	UniParc:UPI0007F2424C	UniProt:A0A194YL28	MapMan:15.2.1

Description

hypothetical protein

Coordinates

chr10:+:58158917..58166804

Molecular Weight (calculated)

71349.5 Da

IEP (calculated)

4.622

GRAVY (calculated)

-0.166

Length

621 amino acids

Sequence
(BLAST)

001: MGAEQGYDDM EVTLRDSDVF NYIVEVLQNV RMDPFLIDLR YKSQYDFLLD LVDPTKKRTS DEEAMFATTL EALSEAVSTI DTMYHHALLH NIFTMCVWYL
101: NSYTRVVLLD LITRLAAVAD QYLRECLQML VNNFTPPGPL IRYIEEPRWL AKKEEIYSQL QESLKKISDT VPLAPRMLKD IIDRSMPKLF DSKAKMVSFV
201: ECMLGLDADT WDIIGPSLLE KVVYLLTELD VNITWEDILQ DEHNKGIFDM ELEDLDEDED NLGQEGTKVL FGGNVCAEKL DGLMVVVCKH LKSRAEEPDR
301: LNKEFDTLKA IFKSHVIRVH KSKFAQFIMF YACSLYPKIC GEGFAFFLVD IFIDKDKKED AITRMSAVSY VGSYLSRARF ISVNTVVAVL QRLVEWCGDY
401: CGSQLDKGVT ANPIKHQLFY ASCQAVMYVL CFRLRSIMDY PNLKLQLFQM RIQNILAHPL EPLKVCLPSI VNEFLRQARS ASLFHASVNS THEDAVESDL
501: SKAFGGLNRL DMFFPFDPYL LKESDRYIRP NFEFWSLVKT TYSNNNSDED NDELADIDAP GMNVGSLDDH FEIDFNNDDD IEYSMNKMSI TPHRTFYHPL
601: ATNSEFSSMP ARIRPSVSPP S

Best Arabidopsis Sequence Match ( AT2G34750.1 )
(BLAST)

001: MGAVELMSDP SSLCTVENYV DNVDLSDTQL VQTVRKALTS VKTGDSDLYS EMVGVMARDI KEFKDPDVVA QLETVLKALS GAVACIDVLH HQKLLSALFR
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL

Arabidopsis Description

RNA polymerase I specific transcription initiation factor RRN3 protein [Source:UniProtKB/TrEMBL;Acc:Q8L643]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.