CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39395	Soybean	cytosol	92.5	92.36
AT2G34750.1	Thale cress	cytosol	49.12	50.24
Solyc02g082340.2.1	Tomato	nucleus	48.48	49.27
Bra022989.1-P	Field mustard	cytosol	45.61	48.97
CDY71933	Canola	cytosol	27.11	48.85
GSMUA_Achr3P11670_001	Banana	cytosol	48.8	48.42
VIT_04s0044g01800.t01	Wine grape	cytosol, extracellular, nucleus	14.19	48.37
CDX79576	Canola	cytosol	46.57	48.03
Bra021928.1-P	Field mustard	nucleus	45.61	47.83
AT1G30590.2	Thale cress	cytosol	46.25	47.78
CDX84629	Canola	cytosol	46.57	47.63
CDY43658	Canola	cytosol	45.61	47.27
GSMUA_Achr1P19720_001	Banana	cytosol	47.05	46.9
Os06t0688100-02	Rice	cytosol	45.93	46.3
CDX84284	Canola	cytosol	44.18	46.17
CDY31637	Canola	cytosol	42.42	45.63
AT2G39240.1	Thale cress	cytosol	41.63	45.55
TraesCS6A01G171400.1	Wheat	cytosol	42.58	44.95
Bra005396.1-P	Field mustard	cytosol	44.02	43.95
TraesCS6B01G199600.1	Wheat	cytosol	43.86	43.58
TraesCS6D01G161100.3	Wheat	cytosol	44.02	43.4
KXG20689	Sorghum	cytosol	42.74	43.16
TraesCS7D01G430000.2	Wheat	cytosol	42.74	42.47
HORVU7Hr1G100370.1	Barley	cytosol	42.42	42.02
TraesCS7B01G339300.1	Wheat	cytosol	42.11	41.77
TraesCS7A01G440500.1	Wheat	cytosol	41.63	41.3
Zm00001d014575_P002	Maize	cytosol	42.74	40.61
TraesCS4B01G109300.1	Wheat	cytosol	37.16	39.76
Zm00001d036138_P002	Maize	cytosol	12.76	33.2
CDY36511	Canola	plastid	11.16	25.93

Protein Annotations

EntrezGene:100814416	MapMan:15.2.1	EMBL:ACUP02010114	EnsemblPlantsGene:GLYMA_16G112800	GO:GO:0001042	GO:GO:0001180
GO:GO:0001181	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006356	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	UniProt:I1MMT8	EnsemblPlants:KRH07819	ProteinID:KRH07819	ProteinID:KRH07819.1
ProteinID:KRH07820.1	PFAM:PF05327	PANTHER:PTHR12790	InterPro:RNA_pol_I_trans_ini_fac_RRN3	UniParc:UPI000233B623	SEG:seg

Description

hypothetical protein

Coordinates

chr16:+:25033921..25041652

Molecular Weight (calculated)

71195.1 Da

IEP (calculated)

4.637

GRAVY (calculated)

-0.048

Length

627 amino acids

Sequence
(BLAST)

001: MGRVQVNNKE EFSQMENDDF SDSQLVRHFR GVLVAVTTGD RENYDELVGY LHPKKNLNPD EVAILVTTLK ALSGAVSYID SVHHESLLFA VSRMSLWNYG
101: IDIMDALLEL IISLAASNGK YIDWCLEMLV KHFVPPFYLL DSLRQENGID RKNKVLSRVH AALKEIADLV PLAPLRLSPI VIQKMPSVFS KETEIVMYVE
201: NMLRLESGAI GETVGSIMLP ALVDRLLELD VEIGWDGILQ EDAKGIFEME LEDVTEFADE DENCDSMPPS ELLNRKNLQG NLVVEKLDSL MVLAFLHLES
301: CQSSGRLTEV FDTLLASFQR TVLNAYKSKF TQYVMFYACA LDPEGCGVKF AMVLADMFGC DVNPPITRMS AAAYLASYLT RAKFLSAALV TNIIQSLVDW
401: CYAYCKLRDF DMNPRAHQVF YSGCQAIMYI LCFRMRSLMD IPRLKLQLLN MPMEAILKHK LSPLKVCLPT VVVEFLRQAK AAQLFMASES FVFDDMLESD
501: LSKAFGGIDR LDMFFPFDPC LLKKSESYIR PHFVRWSKVR TTYDDDDNDE LSDSGSEVSD DDFIDRNTKD MIDDDMMVSV EGFDFNPDLN KMSITPRKSF
601: KHGFETQLNQ CKRMPARIRP STSPESL

Best Arabidopsis Sequence Match ( AT2G34750.1 )
(BLAST)

001: MGAVELMSDP SSLCTVENYV DNVDLSDTQL VQTVRKALTS VKTGDSDLYS EMVGVMARDI KEFKDPDVVA QLETVLKALS GAVACIDVLH HQKLLSALFR
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL

Arabidopsis Description

RNA polymerase I specific transcription initiation factor RRN3 protein [Source:UniProtKB/TrEMBL;Acc:Q8L643]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.