CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
extracellular 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, extracellular, plastid
BaCelLo:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71933	Canola	cytosol	24.44	18.97
CDY43658	Canola	cytosol	32.59	14.55
CDX84284	Canola	cytosol	31.11	14.0
CDX84629	Canola	cytosol	31.48	13.87
CDY31637	Canola	cytosol	29.63	13.72
CDX79576	Canola	cytosol	30.37	13.49
VIT_04s0044g01700.t01	Wine grape	cytosol	27.78	11.96
KRH07819	Soybean	cytosol	25.93	11.16
KRH39395	Soybean	cytosol	25.93	11.15
GSMUA_Achr3P11670_001	Banana	cytosol	25.19	10.76
GSMUA_Achr1P19720_001	Banana	cytosol	24.44	10.49
Os06t0688100-02	Rice	cytosol	24.07	10.45
Solyc02g082340.2.1	Tomato	nucleus	22.22	9.72
KXG20689	Sorghum	cytosol	21.11	9.18
TraesCS6A01G171400.1	Wheat	cytosol	20.0	9.09
TraesCS4B01G109300.1	Wheat	cytosol	19.63	9.04
TraesCS6D01G161100.3	Wheat	cytosol	20.0	8.49
TraesCS6B01G199600.1	Wheat	cytosol	19.63	8.4
TraesCS7D01G430000.2	Wheat	cytosol	19.63	8.4
TraesCS7A01G440500.1	Wheat	cytosol	19.63	8.39
HORVU7Hr1G100370.1	Barley	cytosol	19.63	8.37
TraesCS7B01G339300.1	Wheat	cytosol	19.26	8.23
Zm00001d014575_P002	Maize	cytosol	19.26	7.88
Zm00001d036138_P002	Maize	cytosol	2.96	3.32
VIT_04s0044g01800.t01	Wine grape	cytosol, extracellular, nucleus	1.48	2.17

Protein Annotations

EnsemblPlants:CDY36511	EnsemblPlantsGene:GSBRNA2T00062181001	InterPro:RNA_pol_I_trans_ini_fac_RRN3	PANTHER:PTHR31558	PANTHER:PTHR31558:SF10	PFAM:PF05327
ProteinID:CDY36511	ProteinID:CDY36511.1	SEG:seg	UniParc:UPI0004EEFFFD	UniProt:A0A078HFF4	MapMan:15.2.1

Description

BnaC03g48700DBnaC03g48700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFF4]

Coordinates

chrLK032377:+:307966..310206

Molecular Weight (calculated)

31245.6 Da

IEP (calculated)

8.388

GRAVY (calculated)

-0.314

Length

270 amino acids

Sequence
(BLAST)

001: MLHSVMVLMT TIFPLESDQS SIESCKLKLP RSISDLRSLK RLKSSSRHLR TTLWIYTKQK FRRLVDECVD YCRTCNGDIN PKAHQIFYSG CQAIMYVLCF
101: RKRSILVVPR FRSELIPLES ILMHKLNPLK FVNISASMPD VPMKRMSNAS VWDFVHLDFE KGAAKMMCKR GEMSNANFHM TQLQWNCSQI DGNRMSHEEA
201: WYDSFSYIDS DSDDGSNSSV FEDANANASA MGQVIQYEEF YGSYLTIDGN KAETFSNKIM RLKWWFHALG

Best Arabidopsis Sequence Match ( AT1G13970.1 )
(BLAST)

001: MGGCVSSQRK LSNKLQQKKQ KRGRSGKCRS KISASMPDVP MKRMSNASVR DFAVSEYVHL DFDNCAAKMM CKRAEMSNAN FHLTQLQWNC SQIDGNRISH
101: EEAWYDSFSY IDSDSDDGSN SSVFEDANAS AMGQVIQYEE FYESYLKIDG NKGETYSSKN EVSIKRNQVA DESHHETFKT TTCEDHQDHR KKSSKVVMVS
201: VRRTSIDSKS TPSEFSSAEK LLYRPKAGSM IQRSLGEKMT SQGSWSEVSP SSFKLRGLNF FRDKQKCPAP NCSPYIPIGV DLFACPKKIN HIAQHIELPN
301: LKPASSQVCD IPNLLIVNIQ LPMYPTSMFG DYDGEGLSLV LYFKRNENYH KEISSHFKET IKRFMEDEME KVKGFTREST VPFRERLKIM AGLVNPEDFQ
401: LSSTERKLIT AYNDRPVLSR PQHDFFQGPN YFEIDLDIHR FSYISRKGLE SFRDRIKNGI LDLGLTIQAQ SPEELPEQVL CCVRLNKIDF VNHGQIPTLL
501: TNKQ

Arabidopsis Description

Beta-hexosaminidase (DUF1336) [Source:UniProtKB/TrEMBL;Acc:Q9XI89]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.