Factsheet for Os06t0688100-02

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G171400.1	Wheat	cytosol	72.67	76.09
TraesCS6D01G161100.3	Wheat	cytosol	77.17	75.47
TraesCS6B01G199600.1	Wheat	cytosol	75.4	74.33
KXG20689	Sorghum	cytosol	74.12	74.24
HORVU7Hr1G100370.1	Barley	cytosol	75.08	73.78
TraesCS7B01G339300.1	Wheat	cytosol	74.44	73.26
TraesCS7A01G440500.1	Wheat	cytosol	74.28	73.1
TraesCS7D01G430000.2	Wheat	cytosol	74.12	73.06
Zm00001d014575_P002	Maize	cytosol	72.51	68.33
TraesCS4B01G109300.1	Wheat	cytosol	58.04	61.6
GSMUA_Achr1P19720_001	Banana	cytosol	58.52	57.87
GSMUA_Achr3P11670_001	Banana	cytosol	58.68	57.75
Zm00001d036138_P002	Maize	cytosol	22.35	57.68
VIT_04s0044g01700.t01	Wine grape	cytosol	48.39	48.01
KRH39395	Soybean	cytosol	46.95	46.5
KRH07819	Soybean	cytosol	46.3	45.93
CDY71933	Canola	cytosol	25.56	45.69
Bra022989.1-P	Field mustard	cytosol	40.84	43.49
AT2G34750.1	Thale cress	cytosol	42.77	43.39
CDY43658	Canola	cytosol	41.8	42.98
CDX79576	Canola	cytosol	41.48	42.43
Bra021928.1-P	Field mustard	nucleus	40.68	42.31
CDX84629	Canola	cytosol	41.64	42.25
Solyc02g082340.2.1	Tomato	nucleus	41.32	41.65
AT1G30590.2	Thale cress	cytosol	40.19	41.19
CDY31637	Canola	cytosol	38.59	41.17
CDX84284	Canola	cytosol	39.39	40.83
Bra005396.1-P	Field mustard	cytosol	39.71	39.33
AT2G39240.1	Thale cress	cytosol	35.85	38.92
VIT_04s0044g01800.t01	Wine grape	cytosol, extracellular, nucleus	9.81	33.15
CDY36511	Canola	plastid	10.45	24.07

Protein Annotations

MapMan:15.2.1	EntrezGene:4341897	EMBL:AK101144	ProteinID:BAD45608.1	ProteinID:BAD46064.1	ProteinID:BAF20327.2
ProteinID:BAS99211.1	ProteinID:BAS99212.1	ProteinID:EEE66248.1	GO:GO:0001042	GO:GO:0001181	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006356	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:Os06g0688100	EnsemblPlants:Os06t0688100-02	PFAM:PF05327	PANTHER:PTHR12790	UniProt:Q653F3
InterPro:RNA_pol_I_trans_ini_fac_RRN3	UniParc:UPI000043A348	RefSeq:XP_015643604.1	RefSeq:XP_015643605.1	SEG:seg	:

Description

Hypothetical conserved gene. (Os06t0688100-01);RNA polymerase I specific transcription initiation factor RRN3 family protein. (Os06t0688100-02);RNA polymerase I specific transcription initiation factor RRN3 domain containing protein. (Os06t0688100-03);Hypothetical conserved gene. (Os06t0688100-04)

Coordinates

chr6:+:28699609..28706342

Molecular Weight (calculated)

71219.6 Da

IEP (calculated)

4.551

GRAVY (calculated)

-0.136

Length

622 amino acids

Sequence
(BLAST)

001: MGAELRRDDM EVAEEDISDS QAFRFVEHVL QSVRMDPFQV DLRDKEEYDS LLSIVDSSKK RSYDDEALLV TTLKALSEAV SKIDIMYHHA LLNNIFTMSI
101: WYLNSDTRDA LLSLITRLAA VADQFLRECL QMLVNNFTPP GSLTAFIGQP RWLARKKEIY SQLHESLRMI SDTVPLAPRM LKDIIDRSMP KLFDNKAKMV
201: SFVECMLGLD NDRMGDLIGA LLLAKVVDLL TELDVNITWE DILQDEHNKG IFDMELEDLG EDEDSLGQEG TKALFGGNAC AEKLDGLMVV FCEHLKSCKE
301: HGRLPQEFDI LKTIFRASVL RVHKSKFAQF IMFYACSLDP EICGLEFALF LSDIFIKKEE DSISRMSAVS YVGSYLSRAR FISADTVVGI LKRLVDWCVD
401: YCDLQNNIRI TTKPINHQIF YASCQAVMYI LCFRLRSIMD YPNLKAQLFN MPFGYILTHP LEPLKVCLPS IVDEFLRQAK AARLFNASVH SEFEDALESD
501: LSKTFGGMNR LDMFFPFDPY LLKESDRYMR PNFEYWSMVK TTYNNYNSDV DDELVDLDAP EMNVGSLDDH VEIDLNSDDD LEYSMNKMSI TPNRSFFHQI
601: MANSDTGLTM PARIRPSISP PS

Best Arabidopsis Sequence Match ( AT2G34750.1 )
(BLAST)

001: MGAVELMSDP SSLCTVENYV DNVDLSDTQL VQTVRKALTS VKTGDSDLYS EMVGVMARDI KEFKDPDVVA QLETVLKALS GAVACIDVLH HQKLLSALFR
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL

Arabidopsis Description

RNA polymerase I specific transcription initiation factor RRN3 protein [Source:UniProtKB/TrEMBL;Acc:Q8L643]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.