Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G161100.3 | Wheat | cytosol | 97.14 | 90.72 |
| TraesCS6B01G199600.1 | Wheat | cytosol | 94.78 | 89.22 |
| TraesCS7A01G440500.1 | Wheat | cytosol | 80.64 | 75.79 |
| Os06t0688100-02 | Rice | cytosol | 76.09 | 72.67 |
| KXG20689 | Sorghum | cytosol | 70.37 | 67.31 |
| Zm00001d014575_P002 | Maize | cytosol | 68.86 | 61.97 |
| GSMUA_Achr1P19720_001 | Banana | cytosol | 54.55 | 51.51 |
| GSMUA_Achr3P11670_001 | Banana | cytosol | 54.71 | 51.42 |
| CDY71933 | Canola | cytosol | 26.43 | 45.11 |
| VIT_04s0044g01700.t01 | Wine grape | cytosol | 46.8 | 44.34 |
| Zm00001d036138_P002 | Maize | cytosol | 17.85 | 43.98 |
| KRH39395 | Soybean | cytosol | 45.45 | 42.99 |
| KRH07819 | Soybean | cytosol | 44.95 | 42.58 |
| AT2G34750.1 | Thale cress | cytosol | 42.09 | 40.78 |
| Bra022989.1-P | Field mustard | cytosol | 39.39 | 40.07 |
| CDX79576 | Canola | cytosol | 40.24 | 39.31 |
| CDY43658 | Canola | cytosol | 39.9 | 39.17 |
| CDX84629 | Canola | cytosol | 40.4 | 39.15 |
| AT1G30590.2 | Thale cress | cytosol | 39.9 | 39.04 |
| Bra021928.1-P | Field mustard | nucleus | 39.23 | 38.96 |
| Solyc02g082340.2.1 | Tomato | nucleus | 39.9 | 38.41 |
| CDY31637 | Canola | cytosol | 36.2 | 36.88 |
| CDX84284 | Canola | cytosol | 37.21 | 36.83 |
| AT2G39240.1 | Thale cress | cytosol | 35.35 | 36.65 |
| Bra005396.1-P | Field mustard | cytosol | 37.54 | 35.51 |
| VIT_04s0044g01800.t01 | Wine grape | cytosol, extracellular, nucleus | 9.09 | 29.35 |
| CDY36511 | Canola | plastid | 9.09 | 20.0 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G171400.1 | EnsemblPlantsGene:TraesCS6A01G171400 | InterPro:RNA_pol_I_trans_ini_fac_RRN3 | PANTHER:PTHR12790 | PFAM:PF05327 | SEG:seg |
| MapMan:15.2.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:182306088..182310424
Molecular Weight (calculated)
67589.0 Da
IEP (calculated)
4.539
GRAVY (calculated)
-0.145
Length
594 amino acids
Sequence
(BLAST)
(BLAST)
001: DPFLVDPYDM DQYNKMVSTL DTSKKKTPDE EALYVDDLKA LSEAVSKIDI TYHHLLLNNM FTIRIWYLQR DTLDAFLDLI TRLAAVADQY LRECLQMLVN
101: NFTPPLVQRN ELPRWAVSRK KDIFFHLCES LKTISDTVPL APRILRDIID RSMPKLFDNK AKMVSFVECM LGLDTDRMGD LIGATLLAKV VDLLTELDVN
201: ITWEDIIQGE HNKGIFEMEL EDLDEDEDGL GQAGTKVLFG GNACAEKLDS LMVVVCEHLK SCAERGYLDK EFDILKTIFR ASVLRVHRSK FCQFIMFYAC
301: SLDPKICGLG FAFFLTDIFL NKEEDPISRM SAVSYVGSYL SRARFISADT VLGILKKLVD WCDEYCVLQN RGTTANPNHQ IFYATCQAVM YVLCFRLRSI
401: MDYPNLKAQL FQLSFGFILN HRLEPLKVCL PSIVNEFLRQ AKDAGLFAAS MYSAAEDAIE SDLSRAFGGI NRLDTFFPFD PYLLKESDRY IRPNFEFWSM
501: VKTTYNNDKD DDDDELLDLD APEMNVGSLD DHVEIDINSD DDELEYSMNK MSITPHRSSY HGMAADGGDA GLSMPARIRP SASPPSRWAM SGSP
101: NFTPPLVQRN ELPRWAVSRK KDIFFHLCES LKTISDTVPL APRILRDIID RSMPKLFDNK AKMVSFVECM LGLDTDRMGD LIGATLLAKV VDLLTELDVN
201: ITWEDIIQGE HNKGIFEMEL EDLDEDEDGL GQAGTKVLFG GNACAEKLDS LMVVVCEHLK SCAERGYLDK EFDILKTIFR ASVLRVHRSK FCQFIMFYAC
301: SLDPKICGLG FAFFLTDIFL NKEEDPISRM SAVSYVGSYL SRARFISADT VLGILKKLVD WCDEYCVLQN RGTTANPNHQ IFYATCQAVM YVLCFRLRSI
401: MDYPNLKAQL FQLSFGFILN HRLEPLKVCL PSIVNEFLRQ AKDAGLFAAS MYSAAEDAIE SDLSRAFGGI NRLDTFFPFD PYLLKESDRY IRPNFEFWSM
501: VKTTYNNDKD DDDDELLDLD APEMNVGSLD DHVEIDINSD DDELEYSMNK MSITPHRSSY HGMAADGGDA GLSMPARIRP SASPPSRWAM SGSP
001: MGAVELMSDP SSLCTVENYV DNVDLSDTQL VQTVRKALTS VKTGDSDLYS EMVGVMARDI KEFKDPDVVA QLETVLKALS GAVACIDVLH HQKLLSALFR
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL
Arabidopsis Description
RNA polymerase I specific transcription initiation factor RRN3 protein [Source:UniProtKB/TrEMBL;Acc:Q8L643]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.