Factsheet for GSMUA_Achr1P19720_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P11670_001	Banana	cytosol	86.01	85.6
Os06t0688100-02	Rice	cytosol	57.87	58.52
TraesCS6A01G171400.1	Wheat	cytosol	51.51	54.55
TraesCS6B01G199600.1	Wheat	cytosol	54.21	54.04
TraesCS6D01G161100.3	Wheat	cytosol	54.37	53.77
KXG20689	Sorghum	cytosol	52.78	53.46
TraesCS7D01G430000.2	Wheat	cytosol	52.78	52.61
TraesCS7B01G339300.1	Wheat	cytosol	52.78	52.53
HORVU7Hr1G100370.1	Barley	cytosol	52.62	52.29
TraesCS7A01G440500.1	Wheat	cytosol	52.46	52.22
Zm00001d014575_P002	Maize	cytosol	52.15	49.7
VIT_04s0044g01700.t01	Wine grape	cytosol	49.13	49.28
TraesCS4B01G109300.1	Wheat	cytosol	44.99	48.29
CDY71933	Canola	cytosol	26.55	47.99
KRH39395	Soybean	cytosol	47.06	47.13
KRH07819	Soybean	cytosol	46.9	47.05
Zm00001d036138_P002	Maize	cytosol	17.65	46.06
Bra021928.1-P	Field mustard	nucleus	42.61	44.82
AT2G34750.1	Thale cress	cytosol	43.4	44.54
CDY43658	Canola	cytosol	42.61	44.3
Bra022989.1-P	Field mustard	cytosol	41.02	44.18
Solyc02g082340.2.1	Tomato	nucleus	43.24	44.08
CDX84629	Canola	cytosol	42.13	43.23
CDX79576	Canola	cytosol	41.49	42.93
AT1G30590.2	Thale cress	cytosol	41.34	42.83
CDY31637	Canola	cytosol	38.95	42.02
CDX84284	Canola	cytosol	39.9	41.83
Bra005396.1-P	Field mustard	cytosol	40.86	40.92
AT2G39240.1	Thale cress	cytosol	37.2	40.84
VIT_04s0044g01800.t01	Wine grape	cytosol, extracellular, nucleus	10.02	34.24
CDY36511	Canola	plastid	10.49	24.44

Protein Annotations

EnsemblPlants:GSMUA_Achr1P19720_001	EnsemblPlants:GSMUA_Achr1T19720_001	EnsemblPlantsGene:GSMUA_Achr1G19720_001	InterPro:RNA_pol_I_trans_ini_fac_RRN3	PANTHER:PTHR12790	PFAM:PF05327
SEG:seg	UniParc:UPI0002966872	UniProt:M0S1D0	MapMan:15.2.1	:	:

Description

RNA polymerase I specific transcription initiation factor RRN3 family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G19720_001]

Coordinates

chr1:+:14772637..14781925

Molecular Weight (calculated)

71805.8 Da

IEP (calculated)

4.769

GRAVY (calculated)

-0.055

Length

629 amino acids

Sequence
(BLAST)

001: MGVELASNDL LIYEAEDGYL SDSEAFASVI HVLDGVRMAP VLVAQSDRDQ YDYLLSIVDP GKRMGPDEEA LLATVLKALS GAVSKIDIMY HGSLLSNIFG
101: LCLWNYGVDA RNALLELITT LAAVPDKFLD ACLHMLVVNF LPPRRLRESI SQSRWLTRKK EIHNELHMAL HYITVIIPLA PMKLRNVIDK RMPRYTDPKD
201: VIVLFVECML GLENDEVGEF LGSTLLAKVV DLLADLDVNI TWEDILQEEH NKGIFEMELE DWDDDMDNVA KAGTKLPMEN GVLKGNAYAD KLDGLMVIVC
301: EHLKLRADSG HLLNVFETLS EIFRIAVLKL HKSKFAQFLM FYACSLDPDI CGLKFAVLLT DIFVSKHEDP DSRMKAVSYL ASYLARAKFI SSSLVASILK
401: RLVDWCFEYC QYQDSQEKKI NPQAHRIFYS GCQAVMYILC FRMRAILDVS HLRQLLFHMP LVSILCHPNL DPLKVCLPSI VQEFLRQAKA GRLFKISIPY
501: LDDNSLESEF SKAFGGIERL DMFFPFDPYL LKDSDRFMRP NFEFWSMVKT TYSNCNSEGE DEFDDLDTPD FPENNTHDDL DLDNRDELEF SMNKMSITPN
601: PNFQHPVITN FDQPSRMPAR IRPSVSPPW

Best Arabidopsis Sequence Match ( AT2G34750.1 )
(BLAST)

001: MGAVELMSDP SSLCTVENYV DNVDLSDTQL VQTVRKALTS VKTGDSDLYS EMVGVMARDI KEFKDPDVVA QLETVLKALS GAVACIDVLH HQKLLSALFR
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL

Arabidopsis Description

RNA polymerase I specific transcription initiation factor RRN3 protein [Source:UniProtKB/TrEMBL;Acc:Q8L643]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.